Analysis of interatomic Contacts of Structural Units in PDB entry:
4J4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J4J entry

There are 2 chains in PDB entry 4J4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -27GLU 373
B
 GLN -27GLU 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4J4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-22 -13Right-handed alpha
Helix 2
2
A
249 262Right-handed alpha
Helix 3
3
A
280 293Right-handed alpha
Helix 4
4
A
311 324Right-handed alpha
Helix 5
5
A
332 343Right-handed alpha
Helix 6
6
A
356 373Right-handed alpha
Helix 7
7
B
-22 -13Right-handed alpha
Helix 8
8
B
226 229Right-handed 310
Helix 9
9
B
249 262Right-handed alpha
Helix 10
10
B
280 293Right-handed alpha
Helix 11
11
B
311 323Right-handed alpha
Helix 12
12
B
332 343Right-handed alpha
Helix 13
13
B
356 373Right-handed alpha
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There are 2 sheets in PDB entry 4J4J. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 241first strand
Strand 2
A
-3 226anti-parallel
Strand 3
A
268 275anti-parallel
Strand 4
A
297 303parallel
Strand 5
A
326 330parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 241first strand
Strand 2
B
-3 224anti-parallel
Strand 3
B
269 277anti-parallel
Strand 4
B
297 305parallel
Strand 5
B
326 329parallel
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