Analysis of interatomic Contacts of Structural Units in PDB entry:
4J4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J4L entry

There are 4 chains in PDB entry 4J4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 43PRO 300
B
 PRO 43CYS 299
C
 GLY 17MET 184
D
 LEU 19MET 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4J4L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 48Right-handed alpha
Helix 2
2
A
50 62Right-handed alpha
Helix 3
3
A
71 78Right-handed alpha
Helix 4
4
A
93 97Right-handed 310
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
259 269Right-handed alpha
Helix 7
7
A
293 297Right-handed 310
Helix 8
8
B
44 48Right-handed alpha
Helix 9
9
B
50 62Right-handed alpha
Helix 10
10
B
71 77Right-handed alpha
Helix 11
11
B
93 97Right-handed 310
Helix 12
12
B
113 119Right-handed 310
Helix 13
13
B
259 270Right-handed alpha
Helix 14
14
B
281 285Right-handed 310
Helix 15
15
B
293 297Right-handed 310
Helix 16
16
C
18 48Right-handed alpha
Helix 17
17
C
68 72Right-handed 310
Helix 18
18
C
79 100Right-handed alpha
Helix 19
19
C
108 130Right-handed alpha
Helix 20
20
C
140 153Right-handed alpha
Helix 21
21
C
155 182Right-handed alpha
Helix 22
22
D
20 45Right-handed alpha
Helix 23
23
D
58 62Right-handed 310
Helix 24
24
D
68 72Right-handed 310
Helix 25
25
D
79 103Right-handed alpha
Helix 26
26
D
108 128Right-handed alpha
Helix 27
27
D
140 153Right-handed alpha
Helix 28
28
D
155 182Right-handed alpha
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There are 2 sheets in PDB entry 4J4L. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
102 107parallel
Strand 3
A
124 129parallel
Strand 4
A
148 151parallel
Strand 5
A
172 174parallel
Strand 6
A
196 198parallel
Strand 7
A
220 222parallel
Strand 8
A
244 246parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 83first strand
Strand 2
B
102 107parallel
Strand 3
B
124 129parallel
Strand 4
B
148 151parallel
Strand 5
B
172 174parallel
Strand 6
B
196 198parallel
Strand 7
B
220 222parallel
Strand 8
B
244 246parallel
Strand 9
B
273 274parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il