Analysis of interatomic Contacts of Structural Units in PDB entry:
4J4P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4J4P entry

There are 6 chains in PDB entry 4J4P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 230	VAL 543
B	PHE 229	ASN 544
H	GLN 20	CYS 249
L	ALA 19	GLU 233
C	GLN 20	LYS 247
D	ALA 19	GLU 233

There are 15 helices in PDB entry 4J4P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	276	278	Right-handed 310
Helix 2	2	A	301	305	Right-handed alpha
Helix 3	3	A	344	350	Right-handed alpha
Helix 4	4	A	513	517	Right-handed alpha
Helix 5	5	B	276	278	Right-handed 310
Helix 6	6	B	301	306	Right-handed alpha
Helix 7	7	B	344	350	Right-handed alpha
Helix 8	8	B	406	412	Right-handed alpha
Helix 9	9	B	512	519	Right-handed alpha
Helix 10	10	H	85	88	Right-handed 310
Helix 11	11	H	109	113	Right-handed 310
Helix 12	12	H	233	237	Right-handed 310
Helix 13	13	L	204	211	Right-handed alpha
Helix 14	14	C	109	113	Right-handed 310
Helix 15	15	D	204	209	Right-handed alpha

There are 38 sheets in PDB entry 4J4P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	287	first strand
Strand 2	A	290	300	anti-parallel
Strand 3	A	250	257	anti-parallel
Strand 4	A	233	239	anti-parallel
Strand 5	B	233	239	anti-parallel
Strand 6	B	250	259	anti-parallel
Strand 7	B	291	300	anti-parallel
Strand 8	B	280	285	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	265	270	anti-parallel
Strand 3	A	310	316	anti-parallel
Strand 4	A	319	325	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	340	first strand
Strand 2	A	355	363	anti-parallel
Strand 3	A	397	404	anti-parallel
Strand 4	A	386	391	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	376	first strand
Strand 2	A	416	421	anti-parallel
Strand 3	A	429	433	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	446	first strand
Strand 2	A	459	469	anti-parallel
Strand 3	A	503	512	anti-parallel
Strand 4	A	491	492	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	446	first strand
Strand 2	A	459	469	anti-parallel
Strand 3	A	503	512	anti-parallel
Strand 4	A	496	497	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	475	480	anti-parallel
Strand 3	A	522	527	anti-parallel
Strand 4	A	536	541	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	265	270	anti-parallel
Strand 3	B	310	316	anti-parallel
Strand 4	B	319	325	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	340	first strand
Strand 2	B	355	363	anti-parallel
Strand 3	B	397	404	anti-parallel
Strand 4	B	386	391	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	376	first strand
Strand 2	B	416	421	anti-parallel
Strand 3	B	429	433	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	447	first strand
Strand 2	B	462	469	anti-parallel
Strand 3	B	503	509	anti-parallel
Strand 4	B	491	492	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	447	first strand
Strand 2	B	462	469	anti-parallel
Strand 3	B	503	509	anti-parallel
Strand 4	B	496	497	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	479	first strand
Strand 2	B	522	528	anti-parallel
Strand 3	B	536	537	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	479	first strand
Strand 2	B	522	528	anti-parallel
Strand 3	B	540	541	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	26	first strand
Strand 2	H	37	44	anti-parallel
Strand 3	H	100	105	anti-parallel
Strand 4	H	90	95	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	140	144	parallel
Strand 3	H	114	121	anti-parallel
Strand 4	H	54	61	anti-parallel
Strand 5	H	65	74	anti-parallel
Strand 6	H	78	82	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	140	144	parallel
Strand 3	H	114	121	anti-parallel
Strand 4	H	133	136	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	157	first strand
Strand 2	H	170	178	anti-parallel
Strand 3	H	209	216	anti-parallel
Strand 4	H	196	198	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	157	first strand
Strand 2	H	170	178	anti-parallel
Strand 3	H	209	216	anti-parallel
Strand 4	H	202	203	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	184	187	first strand
Strand 2	H	228	232	anti-parallel
Strand 3	H	241	243	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	31	first strand
Strand 2	L	124	128	parallel
Strand 3	L	104	112	anti-parallel
Strand 4	L	53	58	anti-parallel
Strand 5	L	65	68	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	31	first strand
Strand 2	L	124	128	parallel
Strand 3	L	104	112	anti-parallel
Strand 4	L	117	120	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	42	first strand
Strand 2	L	90	96	anti-parallel
Strand 3	L	82	87	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	138	141	first strand
Strand 2	L	153	162	anti-parallel
Strand 3	L	195	203	anti-parallel
Strand 4	L	182	184	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	138	141	first strand
Strand 2	L	153	162	anti-parallel
Strand 3	L	195	203	anti-parallel
Strand 4	L	188	189	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	176	177	first strand
Strand 2	L	167	173	anti-parallel
Strand 3	L	214	220	anti-parallel
Strand 4	L	223	229	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	37	44	anti-parallel
Strand 3	C	100	105	anti-parallel
Strand 4	C	90	95	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	140	144	parallel
Strand 3	C	114	123	anti-parallel
Strand 4	C	53	61	anti-parallel
Strand 5	C	65	74	anti-parallel
Strand 6	C	78	82	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	140	144	parallel
Strand 3	C	114	123	anti-parallel
Strand 4	C	131	136	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	173	178	anti-parallel
Strand 3	C	209	217	anti-parallel
Strand 4	C	196	198	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	171	first strand
Strand 2	C	209	217	anti-parallel
Strand 3	C	202	203	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	187	first strand
Strand 2	C	227	233	anti-parallel
Strand 3	C	238	239	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	187	first strand
Strand 2	C	227	233	anti-parallel
Strand 3	C	242	244	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	124	128	parallel
Strand 3	D	104	112	anti-parallel
Strand 4	D	53	58	anti-parallel
Strand 5	D	65	68	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	124	128	parallel
Strand 3	D	104	112	anti-parallel
Strand 4	D	117	120	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	42	first strand
Strand 2	D	90	95	anti-parallel
Strand 3	D	82	87	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	153	160	anti-parallel
Strand 3	D	196	203	anti-parallel
Strand 4	D	182	184	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	177	first strand
Strand 2	D	172	173	anti-parallel
Strand 3	D	214	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4J4P

Analysis of interatomic Contacts of Structural Units in PDB entry:
4J4P