Analysis of interatomic Contacts of Structural Units in PDB entry:
4J56

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4J56 entry

There are 8 chains in PDB entry 4J56 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 38	GLY 541
B	HIS 38	GLY 541
C	HIS 38	GLY 541
D	HIS 38	GLY 541
E	GLY 0	ALA 104
F	GLY 0	ALA 104
G	GLY 0	ALA 104
H	GLY 0	ALA 104

There are 89 helices in PDB entry 4J56. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	50	62	Right-handed alpha
Helix 2	2	A	85	92	Right-handed alpha
Helix 3	3	A	92	112	Right-handed alpha
Helix 4	4	A	126	152	Right-handed alpha
Helix 5	5	A	204	209	Right-handed alpha
Helix 6	6	A	211	216	Right-handed alpha
Helix 7	7	A	231	245	Right-handed alpha
Helix 8	8	A	261	274	Right-handed alpha
Helix 9	9	A	320	329	Right-handed 310
Helix 10	10	A	356	359	Right-handed 310
Helix 11	11	A	365	382	Right-handed alpha
Helix 12	12	A	409	418	Right-handed alpha
Helix 13	13	A	431	436	Right-handed alpha
Helix 14	14	A	442	446	Right-handed 310
Helix 15	15	A	467	469	Right-handed 310
Helix 16	16	A	481	495	Right-handed alpha
Helix 17	17	A	498	505	Right-handed alpha
Helix 18	18	A	512	519	Right-handed 310
Helix 19	19	B	50	62	Right-handed alpha
Helix 20	20	B	85	92	Right-handed alpha
Helix 21	21	B	92	112	Right-handed alpha
Helix 22	22	B	112	117	Right-handed alpha
Helix 23	23	B	126	152	Right-handed alpha
Helix 24	24	B	204	209	Right-handed alpha
Helix 25	25	B	211	216	Right-handed alpha
Helix 26	26	B	231	245	Right-handed alpha
Helix 27	27	B	261	274	Right-handed alpha
Helix 28	28	B	320	329	Right-handed 310
Helix 29	29	B	356	359	Right-handed 310
Helix 30	30	B	365	382	Right-handed alpha
Helix 31	31	B	409	418	Right-handed alpha
Helix 32	32	B	431	436	Right-handed alpha
Helix 33	33	B	442	446	Right-handed 310
Helix 34	34	B	467	469	Right-handed 310
Helix 35	35	B	481	495	Right-handed alpha
Helix 36	36	B	498	505	Right-handed alpha
Helix 37	37	B	512	519	Right-handed 310
Helix 38	38	C	50	62	Right-handed alpha
Helix 39	39	C	85	92	Right-handed alpha
Helix 40	40	C	92	112	Right-handed alpha
Helix 41	41	C	126	152	Right-handed alpha
Helix 42	42	C	204	209	Right-handed alpha
Helix 43	43	C	211	216	Right-handed alpha
Helix 44	44	C	231	245	Right-handed alpha
Helix 45	45	C	261	274	Right-handed alpha
Helix 46	46	C	320	329	Right-handed 310
Helix 47	47	C	356	359	Right-handed 310
Helix 48	48	C	365	382	Right-handed alpha
Helix 49	49	C	409	418	Right-handed alpha
Helix 50	50	C	431	436	Right-handed alpha
Helix 51	51	C	442	446	Right-handed 310
Helix 52	52	C	467	469	Right-handed 310
Helix 53	53	C	481	495	Right-handed alpha
Helix 54	54	C	498	505	Right-handed alpha
Helix 55	55	C	512	519	Right-handed 310
Helix 56	56	D	50	62	Right-handed alpha
Helix 57	57	D	85	92	Right-handed alpha
Helix 58	58	D	92	112	Right-handed alpha
Helix 59	59	D	126	152	Right-handed alpha
Helix 60	60	D	204	209	Right-handed alpha
Helix 61	61	D	211	216	Right-handed alpha
Helix 62	62	D	231	245	Right-handed alpha
Helix 63	63	D	261	274	Right-handed alpha
Helix 64	64	D	320	329	Right-handed 310
Helix 65	65	D	356	359	Right-handed 310
Helix 66	66	D	365	382	Right-handed alpha
Helix 67	67	D	409	418	Right-handed alpha
Helix 68	68	D	431	436	Right-handed alpha
Helix 69	69	D	442	446	Right-handed 310
Helix 70	70	D	467	469	Right-handed 310
Helix 71	71	D	481	495	Right-handed alpha
Helix 72	72	D	498	505	Right-handed alpha
Helix 73	73	D	512	519	Right-handed 310
Helix 74	74	E	7	19	Right-handed alpha
Helix 75	75	E	30	47	Right-handed alpha
Helix 76	76	E	60	68	Right-handed alpha
Helix 77	77	E	91	104	Right-handed alpha
Helix 78	78	F	7	19	Right-handed alpha
Helix 79	79	F	30	47	Right-handed alpha
Helix 80	80	F	60	68	Right-handed alpha
Helix 81	81	F	91	104	Right-handed alpha
Helix 82	82	G	7	19	Right-handed alpha
Helix 83	83	G	30	47	Right-handed alpha
Helix 84	84	G	60	68	Right-handed alpha
Helix 85	85	G	91	104	Right-handed alpha
Helix 86	86	H	7	19	Right-handed alpha
Helix 87	87	H	30	47	Right-handed alpha
Helix 88	88	H	60	68	Right-handed alpha
Helix 89	89	H	91	104	Right-handed alpha

There are 34 sheets in PDB entry 4J56. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	67	70	parallel
Strand 3	A	42	47	parallel
Strand 4	A	181	190	parallel
Strand 5	A	168	173	anti-parallel
Strand 6	A	159	165	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	67	70	parallel
Strand 3	A	42	47	parallel
Strand 4	A	181	190	parallel
Strand 5	A	352	354	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	125	first strand
Strand 2	B	118	125	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	316	318	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	281	first strand
Strand 2	A	248	252	parallel
Strand 3	A	225	228	parallel
Strand 4	A	309	312	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	291	first strand
Strand 2	A	294	299	anti-parallel
Strand 3	A	304	307	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	338	339	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	402	407	anti-parallel
Strand 3	A	472	479	anti-parallel
Strand 4	A	458	465	anti-parallel
Strand 5	A	422	429	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	67	70	parallel
Strand 3	B	42	47	parallel
Strand 4	B	181	190	parallel
Strand 5	B	168	173	anti-parallel
Strand 6	B	159	165	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	67	70	parallel
Strand 3	B	42	47	parallel
Strand 4	B	181	190	parallel
Strand 5	B	352	354	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	316	318	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	281	first strand
Strand 2	B	248	252	parallel
Strand 3	B	225	228	parallel
Strand 4	B	309	312	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	291	first strand
Strand 2	B	294	299	anti-parallel
Strand 3	B	304	307	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	338	339	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	402	407	anti-parallel
Strand 3	B	472	479	anti-parallel
Strand 4	B	458	465	anti-parallel
Strand 5	B	422	429	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	67	70	parallel
Strand 3	C	42	47	parallel
Strand 4	C	181	190	parallel
Strand 5	C	168	173	anti-parallel
Strand 6	C	159	165	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	67	70	parallel
Strand 3	C	42	47	parallel
Strand 4	C	181	190	parallel
Strand 5	C	352	354	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	125	first strand
Strand 2	D	118	125	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	316	318	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	281	first strand
Strand 2	C	248	252	parallel
Strand 3	C	225	228	parallel
Strand 4	C	309	312	parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	291	first strand
Strand 2	C	294	299	anti-parallel
Strand 3	C	304	307	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	338	339	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	397	first strand
Strand 2	C	402	407	anti-parallel
Strand 3	C	472	479	anti-parallel
Strand 4	C	458	465	anti-parallel
Strand 5	C	422	429	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	157	first strand
Strand 2	D	67	70	parallel
Strand 3	D	42	47	parallel
Strand 4	D	181	190	parallel
Strand 5	D	168	173	anti-parallel
Strand 6	D	159	165	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	157	first strand
Strand 2	D	67	70	parallel
Strand 3	D	42	47	parallel
Strand 4	D	181	190	parallel
Strand 5	D	352	354	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	196	first strand
Strand 2	D	316	318	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	281	first strand
Strand 2	D	248	252	parallel
Strand 3	D	225	228	parallel
Strand 4	D	309	312	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	291	first strand
Strand 2	D	294	299	anti-parallel
Strand 3	D	304	307	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	333	first strand
Strand 2	D	338	339	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	402	407	anti-parallel
Strand 3	D	472	479	anti-parallel
Strand 4	D	458	465	anti-parallel
Strand 5	D	422	429	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	5	first strand
Strand 2	E	51	56	parallel
Strand 3	E	20	26	parallel
Strand 4	E	74	79	anti-parallel
Strand 5	E	82	88	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	5	first strand
Strand 2	F	51	56	parallel
Strand 3	F	20	26	parallel
Strand 4	F	74	79	anti-parallel
Strand 5	F	82	88	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	5	first strand
Strand 2	G	51	56	parallel
Strand 3	G	20	26	parallel
Strand 4	G	74	79	anti-parallel
Strand 5	G	82	88	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	5	first strand
Strand 2	H	51	56	parallel
Strand 3	H	20	26	parallel
Strand 4	H	74	79	anti-parallel
Strand 5	H	82	88	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4J56

Analysis of interatomic Contacts of Structural Units in PDB entry:
4J56