Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J5H entry

There is 1 chain in PDB entry 4J5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4J5H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 21Right-handed 310
Helix 2
2
A
54 58Right-handed 310
Helix 3
3
A
78 81Right-handed 310
Helix 4
4
A
82 91Right-handed alpha
Helix 5
5
A
93 97Right-handed 310
Helix 6
6
A
106 111Right-handed alpha
Helix 7
7
A
112 116Right-handed 310
Helix 8
8
A
125 132Right-handed alpha
Helix 9
9
A
138 142Right-handed 310
Helix 10
10
A
191 193Right-handed 310
Helix 11
11
A
195 201Right-handed alpha
Helix 12
12
A
209 228Right-handed alpha
Helix 13
13
A
236 241Right-handed alpha
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There are 2 sheets in PDB entry 4J5H. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
5 17anti-parallel
Strand 3
A
30 42anti-parallel
Strand 4
A
45 49anti-parallel
Strand 5
A
99 101parallel
Strand 6
A
121 124parallel
Strand 7
A
148 151parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
161 165anti-parallel
Strand 3
A
174 180anti-parallel
Strand 4
A
184 190anti-parallel
Strand 5
A
230 233parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il