Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4J5I entry

There are 6 chains in PDB entry 4J5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	VAL 292
B	VAL 2	ASP 293
C	VAL 2	ASP 293
D	GLN 3	GLY 284
E	VAL 2	ASP 293
F	GLN 3	HIS 12

There are 41 helices in PDB entry 4J5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	27	42	Right-handed alpha
Helix 2	2	A	53	65	Right-handed alpha
Helix 3	3	A	127	133	Right-handed alpha
Helix 4	4	A	135	145	Right-handed alpha
Helix 5	5	A	207	224	Right-handed alpha
Helix 6	6	B	27	42	Right-handed alpha
Helix 7	7	B	53	65	Right-handed alpha
Helix 8	8	B	127	133	Right-handed alpha
Helix 9	9	B	135	145	Right-handed alpha
Helix 10	10	B	161	172	Right-handed alpha
Helix 11	11	B	207	224	Right-handed alpha
Helix 12	12	C	27	42	Right-handed alpha
Helix 13	13	C	53	65	Right-handed alpha
Helix 14	14	C	127	133	Right-handed alpha
Helix 15	15	C	135	145	Right-handed alpha
Helix 16	16	C	207	224	Right-handed alpha
Helix 17	17	D	27	42	Right-handed alpha
Helix 18	18	D	53	65	Right-handed alpha
Helix 19	19	D	127	133	Right-handed alpha
Helix 20	20	D	135	145	Right-handed alpha
Helix 21	21	D	207	224	Right-handed alpha
Helix 22	22	E	27	42	Right-handed alpha
Helix 23	23	E	53	65	Right-handed alpha
Helix 24	24	E	127	133	Right-handed alpha
Helix 25	25	E	135	145	Right-handed alpha
Helix 26	26	E	207	224	Right-handed alpha
Helix 27	27	F	27	42	Right-handed alpha
Helix 28	28	F	53	65	Right-handed alpha
Helix 29	29	F	127	133	Right-handed alpha
Helix 30	30	F	135	145	Right-handed alpha
Helix 31	31	F	207	224	Right-handed alpha
Helix 32	32	G	27	42	Right-handed alpha
Helix 33	33	G	53	65	Right-handed alpha
Helix 34	34	G	127	133	Right-handed alpha
Helix 35	35	G	135	145	Right-handed alpha
Helix 36	36	G	207	224	Right-handed alpha
Helix 37	37	H	27	42	Right-handed alpha
Helix 38	38	H	53	65	Right-handed alpha
Helix 39	39	H	127	133	Right-handed alpha
Helix 40	40	H	135	145	Right-handed alpha
Helix 41	41	H	207	224	Right-handed alpha

There are 32 sheets in PDB entry 4J5I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	15	18	anti-parallel
Strand 3	A	43	46	parallel
Strand 4	A	238	242	anti-parallel
Strand 5	A	107	114	anti-parallel
Strand 6	A	260	266	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	122	126	anti-parallel
Strand 3	A	246	250	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	146	150	anti-parallel
Strand 3	A	177	181	anti-parallel
Strand 4	A	280	283	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	192	194	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	15	18	anti-parallel
Strand 3	B	43	46	parallel
Strand 4	B	238	242	anti-parallel
Strand 5	B	107	114	anti-parallel
Strand 6	B	260	266	anti-parallel
Strand 7	B	81	85	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	122	126	anti-parallel
Strand 3	B	246	250	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	203	first strand
Strand 2	B	146	150	anti-parallel
Strand 3	B	177	181	anti-parallel
Strand 4	B	280	283	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	192	194	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	15	18	anti-parallel
Strand 3	C	43	46	parallel
Strand 4	C	238	242	anti-parallel
Strand 5	C	107	114	anti-parallel
Strand 6	C	260	266	anti-parallel
Strand 7	C	81	85	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	231	first strand
Strand 2	C	122	126	anti-parallel
Strand 3	C	246	250	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	146	150	anti-parallel
Strand 3	C	177	181	anti-parallel
Strand 4	C	280	283	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	192	194	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	15	18	anti-parallel
Strand 3	D	43	46	parallel
Strand 4	D	238	242	anti-parallel
Strand 5	D	107	114	anti-parallel
Strand 6	D	260	266	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	231	first strand
Strand 2	D	122	126	anti-parallel
Strand 3	D	246	250	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	203	first strand
Strand 2	D	146	150	anti-parallel
Strand 3	D	177	181	anti-parallel
Strand 4	D	280	283	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	185	first strand
Strand 2	D	192	194	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	15	18	anti-parallel
Strand 3	E	43	46	parallel
Strand 4	E	238	242	anti-parallel
Strand 5	E	107	114	anti-parallel
Strand 6	E	260	266	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	228	231	first strand
Strand 2	E	122	126	anti-parallel
Strand 3	E	246	250	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	203	first strand
Strand 2	E	146	150	anti-parallel
Strand 3	E	177	181	anti-parallel
Strand 4	E	280	283	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	185	first strand
Strand 2	E	192	194	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	8	first strand
Strand 2	F	15	18	anti-parallel
Strand 3	F	43	46	parallel
Strand 4	F	238	242	anti-parallel
Strand 5	F	107	114	anti-parallel
Strand 6	F	260	266	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	228	231	first strand
Strand 2	F	122	126	anti-parallel
Strand 3	F	246	250	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	203	first strand
Strand 2	F	146	150	anti-parallel
Strand 3	F	177	181	anti-parallel
Strand 4	F	280	283	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	185	first strand
Strand 2	F	192	194	anti-parallel

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There are 7 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	8	first strand
Strand 2	G	15	18	anti-parallel
Strand 3	G	43	46	parallel
Strand 4	G	238	242	anti-parallel
Strand 5	G	107	114	anti-parallel
Strand 6	G	260	266	anti-parallel
Strand 7	G	81	84	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	228	231	first strand
Strand 2	G	122	126	anti-parallel
Strand 3	G	246	250	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	203	first strand
Strand 2	G	146	150	anti-parallel
Strand 3	G	177	181	anti-parallel
Strand 4	G	280	283	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	185	first strand
Strand 2	G	192	194	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	8	first strand
Strand 2	H	15	18	anti-parallel
Strand 3	H	43	46	parallel
Strand 4	H	238	242	anti-parallel
Strand 5	H	107	114	anti-parallel
Strand 6	H	260	266	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	228	231	first strand
Strand 2	H	122	126	anti-parallel
Strand 3	H	246	250	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	200	203	first strand
Strand 2	H	146	150	anti-parallel
Strand 3	H	177	181	anti-parallel
Strand 4	H	280	283	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	183	185	first strand
Strand 2	H	192	194	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4J5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5I