Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J5L entry

There are 2 chains in PDB entry 4J5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1473VAL 1855
B
 ASP 1472VAL 1855
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4J5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1480 1482Right-handed 310
Helix 2
2
A
1483 1492Right-handed alpha
Helix 3
3
A
1499 1505Right-handed alpha
Helix 4
4
A
1507 1523Right-handed alpha
Helix 5
5
A
1525 1547Right-handed alpha
Helix 6
6
A
1550 1571Right-handed alpha
Helix 7
7
A
1574 1578Right-handed 310
Helix 8
8
A
1582 1587Right-handed alpha
Helix 9
9
A
1595 1630Right-handed alpha
Helix 10
10
A
1660 1678Right-handed alpha
Helix 11
11
A
1681 1707Right-handed alpha
Helix 12
12
A
1708 1711Right-handed 310
Helix 13
13
A
1712 1733Right-handed alpha
Helix 14
14
A
1741 1743Right-handed 310
Helix 15
15
A
1744 1754Right-handed alpha
Helix 16
16
A
1760 1771Right-handed alpha
Helix 17
17
A
1775 1786Right-handed alpha
Helix 18
18
A
1797 1808Right-handed alpha
Helix 19
19
A
1837 1841Right-handed 310
Helix 20
20
B
1480 1482Right-handed 310
Helix 21
21
B
1483 1492Right-handed alpha
Helix 22
22
B
1507 1523Right-handed alpha
Helix 23
23
B
1525 1548Right-handed alpha
Helix 24
24
B
1550 1571Right-handed alpha
Helix 25
25
B
1574 1578Right-handed 310
Helix 26
26
B
1582 1588Right-handed alpha
Helix 27
27
B
1595 1630Right-handed alpha
Helix 28
28
B
1660 1678Right-handed alpha
Helix 29
29
B
1681 1705Right-handed alpha
Helix 30
30
B
1707 1711Right-handed 310
Helix 31
31
B
1712 1733Right-handed alpha
Helix 32
32
B
1740 1743Right-handed 310
Helix 33
33
B
1744 1756Right-handed alpha
Helix 34
34
B
1760 1771Right-handed alpha
Helix 35
35
B
1775 1786Right-handed alpha
Helix 36
36
B
1797 1808Right-handed alpha
Helix 37
37
B
1837 1841Right-handed 310
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There are 2 sheets in PDB entry 4J5L. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1477 1478first strand
Strand 2
A
1853 1854anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1477 1478first strand
Strand 2
B
1853 1854anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il