Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J5M entry

There is 1 chain in PDB entry 4J5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1459VAL 1848
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4J5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1473 1475Right-handed 310
Helix 2
2
A
1476 1485Right-handed alpha
Helix 3
3
A
1489 1494Right-handed 310
Helix 4
4
A
1499 1515Right-handed alpha
Helix 5
5
A
1517 1539Right-handed alpha
Helix 6
6
A
1542 1563Right-handed alpha
Helix 7
7
A
1566 1570Right-handed 310
Helix 8
8
A
1574 1579Right-handed alpha
Helix 9
9
A
1587 1614Right-handed alpha
Helix 10
10
A
1616 1623Right-handed alpha
Helix 11
11
A
1653 1671Right-handed alpha
Helix 12
12
A
1674 1700Right-handed alpha
Helix 13
13
A
1701 1704Right-handed 310
Helix 14
14
A
1705 1726Right-handed alpha
Helix 15
15
A
1732 1737Right-handed alpha
Helix 16
16
A
1737 1747Right-handed alpha
Helix 17
17
A
1753 1764Right-handed alpha
Helix 18
18
A
1768 1779Right-handed alpha
Helix 19
19
A
1790 1801Right-handed alpha
Helix 20
20
A
1837 1841Right-handed 310
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There is 1 sheet ( A) in PDB entry 4J5M.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1469 1471first strand
Strand 2
A
1846 1848anti-parallel
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