Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J5N entry

There are 2 chains in PDB entry 4J5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ILE 142
A
 LEU 144GLY 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4J5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
30 35Right-handed 310
Helix 3
3
A
41 59Right-handed alpha
Helix 4
4
A
75 87Right-handed alpha
Helix 5
5
A
98 102Right-handed 310
Helix 6
6
A
104 114Right-handed alpha
Helix 7
7
A
115 130Right-handed alpha
Helix 8
8
A
154 170Right-handed alpha
Helix 9
9
A
182 193Right-handed alpha
Helix 10
10
A
196 198Right-handed 310
Helix 11
11
A
204 208Right-handed 310
Helix 12
12
A
210 219Right-handed alpha
Helix 13
13
A
239 252Right-handed alpha
Helix 14
14
A
253 257Right-handed 310
Helix 15
15
A
277 279Right-handed 310
Helix 16
16
A
280 285Right-handed alpha
Helix 17
17
A
290 295Right-handed alpha
Helix 18
18
A
295 304Right-handed alpha
Helix 19
19
A
306 315Right-handed alpha
Helix 20
20
A
315 323Right-handed alpha
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There are 3 sheets in PDB entry 4J5N. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
8 10anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
61 66parallel
Strand 3
A
17 26parallel
Strand 4
A
266 269parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
173 176parallel
Strand 3
A
200 202parallel
Strand 4
A
223 226parallel
Strand 5
A
259 261parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il