Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J5O entry

There are 2 chains in PDB entry 4J5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 418SER 528
B
 PRO 420SER 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4J5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
441 455Right-handed alpha
Helix 2
2
A
480 492Right-handed alpha
Helix 3
3
A
507 515Right-handed alpha
Helix 4
4
A
516 520Right-handed 310
Helix 5
5
B
435 439Right-handed 310
Helix 6
6
B
441 455Right-handed alpha
Helix 7
7
B
480 492Right-handed alpha
Helix 8
8
B
507 515Right-handed alpha
Helix 9
9
B
516 520Right-handed 310
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There are 4 sheets in PDB entry 4J5O. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 465first strand
Strand 2
A
474 477anti-parallel
Strand 3
A
425 429anti-parallel
Strand 4
A
502 505anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
499 500anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 465first strand
Strand 2
B
474 477anti-parallel
Strand 3
B
425 429anti-parallel
Strand 4
B
502 505anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
495 496first strand
Strand 2
B
499 500anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il