Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J5U entry

There are 4 chains in PDB entry 4J5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 229
A
 THR 231GLY 420
B
 MET 1HIS 229
B
 THR 231GLY 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 4J5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
7 12Right-handed alpha
Helix 3
3
A
12 29Right-handed alpha
Helix 4
4
A
40 48Right-handed alpha
Helix 5
5
A
49 54Right-handed 310
Helix 6
6
A
68 87Right-handed alpha
Helix 7
7
A
97 110Right-handed alpha
Helix 8
8
A
121 124Right-handed 310
Helix 9
9
A
126 130Right-handed 310
Helix 10
10
A
134 139Right-handed alpha
Helix 11
11
A
155 167Right-handed alpha
Helix 12
12
A
183 195Right-handed alpha
Helix 13
13
A
205 211Right-handed alpha
Helix 14
14
A
229 233Right-handed 310
Helix 15
15
A
244 256Right-handed alpha
Helix 16
16
A
264 279Right-handed alpha
Helix 17
17
A
280 304Right-handed alpha
Helix 18
18
A
310 312Right-handed 310
Helix 19
19
A
323 326Right-handed 310
Helix 20
20
A
328 339Right-handed alpha
Helix 21
21
A
365 371Right-handed alpha
Helix 22
22
A
374 395Right-handed alpha
Helix 23
23
A
398 414Right-handed alpha
Helix 24
24
B
2 6Right-handed 310
Helix 25
25
B
7 12Right-handed alpha
Helix 26
26
B
12 29Right-handed alpha
Helix 27
27
B
40 48Right-handed alpha
Helix 28
28
B
49 54Right-handed 310
Helix 29
29
B
68 87Right-handed alpha
Helix 30
30
B
97 110Right-handed alpha
Helix 31
31
B
126 130Right-handed 310
Helix 32
32
B
134 139Right-handed alpha
Helix 33
33
B
155 167Right-handed alpha
Helix 34
34
B
183 194Right-handed alpha
Helix 35
35
B
205 211Right-handed alpha
Helix 36
36
B
229 233Right-handed 310
Helix 37
37
B
244 256Right-handed alpha
Helix 38
38
B
264 280Right-handed alpha
Helix 39
39
B
280 304Right-handed alpha
Helix 40
40
B
310 312Right-handed 310
Helix 41
41
B
323 326Right-handed 310
Helix 42
42
B
328 339Right-handed alpha
Helix 43
43
B
365 371Right-handed alpha
Helix 44
44
B
374 395Right-handed alpha
Helix 45
45
B
398 414Right-handed alpha
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There are 8 sheets in PDB entry 4J5U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
341 342parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
62 63anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
238 242anti-parallel
Strand 3
A
223 227anti-parallel
Strand 4
A
197 201parallel
Strand 5
A
170 174parallel
Strand 6
A
115 119parallel
Strand 7
A
141 145parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
317 321anti-parallel
Strand 3
A
360 364anti-parallel
Strand 4
A
344 345anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
341 342parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
62 63anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
238 242anti-parallel
Strand 3
B
223 227anti-parallel
Strand 4
B
197 201parallel
Strand 5
B
170 174parallel
Strand 6
B
115 119parallel
Strand 7
B
141 145parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
317 321anti-parallel
Strand 3
B
360 364anti-parallel
Strand 4
B
344 345anti-parallel
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