Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J5W entry

There are 4 chains in PDB entry 4J5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 141PRO 461
B
 GLN 141PRO 461
C
 ASN 227GLU 486
D
 ASN 227GLU 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 4J5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
144 162Right-handed alpha
Helix 2
2
A
194 208Right-handed alpha
Helix 3
3
A
233 237Right-handed 310
Helix 4
4
A
239 261Right-handed alpha
Helix 5
5
A
261 267Right-handed alpha
Helix 6
6
A
268 291Right-handed alpha
Helix 7
7
A
321 332Right-handed alpha
Helix 8
8
A
336 349Right-handed alpha
Helix 9
9
A
358 381Right-handed alpha
Helix 10
10
A
388 418Right-handed alpha
Helix 11
11
A
422 429Right-handed alpha
Helix 12
12
A
444 449Right-handed alpha
Helix 13
13
A
449 456Right-handed alpha
Helix 14
14
B
144 162Right-handed alpha
Helix 15
15
B
194 209Right-handed alpha
Helix 16
16
B
239 261Right-handed alpha
Helix 17
17
B
261 266Right-handed alpha
Helix 18
18
B
268 290Right-handed alpha
Helix 19
19
B
315 319Right-handed 310
Helix 20
20
B
321 333Right-handed alpha
Helix 21
21
B
336 349Right-handed alpha
Helix 22
22
B
358 381Right-handed alpha
Helix 23
23
B
388 418Right-handed alpha
Helix 24
24
B
422 429Right-handed alpha
Helix 25
25
B
444 449Right-handed alpha
Helix 26
26
B
449 456Right-handed alpha
Helix 27
27
C
231 241Right-handed alpha
Helix 28
28
C
263 285Right-handed alpha
Helix 29
29
C
293 317Right-handed alpha
Helix 30
30
C
333 341Right-handed alpha
Helix 31
31
C
342 353Right-handed alpha
Helix 32
32
C
353 360Right-handed alpha
Helix 33
33
C
363 376Right-handed alpha
Helix 34
34
C
385 408Right-handed alpha
Helix 35
35
C
413 420Right-handed alpha
Helix 36
36
C
420 443Right-handed alpha
Helix 37
37
C
449 455Right-handed alpha
Helix 38
38
C
478 484Right-handed alpha
Helix 39
39
D
231 241Right-handed alpha
Helix 40
40
D
263 286Right-handed alpha
Helix 41
41
D
293 317Right-handed alpha
Helix 42
42
D
333 340Right-handed alpha
Helix 43
43
D
342 353Right-handed alpha
Helix 44
44
D
353 360Right-handed alpha
Helix 45
45
D
363 376Right-handed alpha
Helix 46
46
D
385 408Right-handed alpha
Helix 47
47
D
413 420Right-handed alpha
Helix 48
48
D
420 443Right-handed alpha
Helix 49
49
D
448 455Right-handed alpha
Helix 50
50
D
478 483Right-handed alpha
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There are 3 sheets in PDB entry 4J5W. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
298 301anti-parallel
Strand 3
A
304 308anti-parallel
Strand 4
A
211 216anti-parallel
Strand 5
A
222 226anti-parallel
Strand 6
B
222 226anti-parallel
Strand 7
B
211 216anti-parallel
Strand 8
B
304 308anti-parallel
Strand 9
B
298 301anti-parallel
Strand 10
B
292 293anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 325first strand
Strand 2
C
331 332anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
324 325first strand
Strand 2
D
331 332anti-parallel
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