Analysis of interatomic Contacts of Structural Units in PDB entry:
4J6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J6F entry

There are 2 chains in PDB entry 4J6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -2ASP 359
B
 SER -1ASP 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4J6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 6Right-handed alpha
Helix 2
2
A
21 23Right-handed 310
Helix 3
3
A
51 60Right-handed alpha
Helix 4
4
A
103 107Right-handed 310
Helix 5
5
A
158 163Right-handed alpha
Helix 6
6
A
165 179Right-handed alpha
Helix 7
7
A
194 207Right-handed alpha
Helix 8
8
A
219 226Right-handed alpha
Helix 9
9
A
238 248Right-handed alpha
Helix 10
10
A
260 262Right-handed 310
Helix 11
11
A
263 271Right-handed alpha
Helix 12
12
A
291 298Right-handed alpha
Helix 13
13
A
309 322Right-handed alpha
Helix 14
14
A
337 348Right-handed alpha
Helix 15
15
B
0 6Right-handed alpha
Helix 16
16
B
21 23Right-handed 310
Helix 17
17
B
51 60Right-handed alpha
Helix 18
18
B
103 107Right-handed 310
Helix 19
19
B
158 163Right-handed alpha
Helix 20
20
B
165 180Right-handed alpha
Helix 21
21
B
194 207Right-handed alpha
Helix 22
22
B
219 226Right-handed alpha
Helix 23
23
B
238 247Right-handed alpha
Helix 24
24
B
260 262Right-handed 310
Helix 25
25
B
263 271Right-handed alpha
Helix 26
26
B
291 298Right-handed alpha
Helix 27
27
B
309 322Right-handed alpha
Helix 28
28
B
337 348Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 4J6F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 16first strand
Strand 2
A
25 32anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
40 49anti-parallel
Strand 3
A
90 98anti-parallel
Strand 4
A
110 113anti-parallel
Strand 5
A
150 152anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
40 49anti-parallel
Strand 3
A
353 357anti-parallel
Strand 4
A
329 334parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
210 215parallel
Strand 3
A
186 189parallel
Strand 4
A
254 257parallel
Strand 5
A
276 279parallel
Strand 6
A
301 304parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 32first strand
Strand 2
B
10 16anti-parallel
Strand 3
B
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
40 49anti-parallel
Strand 3
B
90 98anti-parallel
Strand 4
B
110 113anti-parallel
Strand 5
B
150 151anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
40 49anti-parallel
Strand 3
B
353 357anti-parallel
Strand 4
B
329 334parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 233first strand
Strand 2
B
210 215parallel
Strand 3
B
186 189parallel
Strand 4
B
254 257parallel
Strand 5
B
276 279parallel
Strand 6
B
301 304parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il