Analysis of interatomic Contacts of Structural Units in PDB entry:
4J6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J6O entry

There are 2 chains in PDB entry 4J6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 169HIS 429
B
 SER 169GLU 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4J6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
191 202Right-handed alpha
Helix 2
2
A
213 216Right-handed 310
Helix 3
3
A
240 254Right-handed alpha
Helix 4
4
A
262 273Right-handed alpha
Helix 5
5
A
282 291Right-handed alpha
Helix 6
6
A
294 307Right-handed alpha
Helix 7
7
A
327 331Right-handed 310
Helix 8
8
A
335 345Right-handed alpha
Helix 9
9
A
394 398Right-handed 310
Helix 10
10
B
191 202Right-handed alpha
Helix 11
11
B
213 216Right-handed 310
Helix 12
12
B
240 254Right-handed alpha
Helix 13
13
B
262 274Right-handed alpha
Helix 14
14
B
282 292Right-handed alpha
Helix 15
15
B
294 307Right-handed alpha
Helix 16
16
B
327 331Right-handed 310
Helix 17
17
B
335 345Right-handed alpha
Helix 18
18
B
361 366Right-handed alpha
Helix 19
19
B
394 398Right-handed 310
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There are 8 sheets in PDB entry 4J6O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
312 314parallel
Strand 3
A
319 321anti-parallel
Strand 4
A
371 374parallel
Strand 5
A
388 390parallel
Strand 6
A
383 384anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
227 230parallel
Strand 3
A
182 185parallel
Strand 4
A
400 406anti-parallel
Strand 5
A
410 415anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
218 221anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
357 359anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
312 314parallel
Strand 3
B
319 321anti-parallel
Strand 4
B
371 374parallel
Strand 5
B
388 390parallel
Strand 6
B
383 385anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 259first strand
Strand 2
B
227 230parallel
Strand 3
B
182 185parallel
Strand 4
B
400 406anti-parallel
Strand 5
B
410 415anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
218 221anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 351first strand
Strand 2
B
357 359anti-parallel
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