Analysis of interatomic Contacts of Structural Units in PDB entry:
4J72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J72 entry

There are 2 chains in PDB entry 4J72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 14LYS 357
B
 PHE 14LYS 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4J72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 23Right-handed alpha
Helix 2
2
A
24 40Right-handed alpha
Helix 3
3
A
41 47Right-handed alpha
Helix 4
4
A
73 93Right-handed alpha
Helix 5
5
A
97 124Right-handed alpha
Helix 6
6
A
129 150Right-handed alpha
Helix 7
7
A
173 197Right-handed alpha
Helix 8
8
A
199 218Right-handed alpha
Helix 9
9
A
219 227Right-handed alpha
Helix 10
10
A
235 256Right-handed alpha
Helix 11
11
A
263 282Right-handed alpha
Helix 12
12
A
284 292Right-handed alpha
Helix 13
13
A
292 312Right-handed alpha
Helix 14
14
A
322 326Right-handed 310
Helix 15
15
A
334 355Right-handed alpha
Helix 16
16
B
15 23Right-handed alpha
Helix 17
17
B
24 40Right-handed alpha
Helix 18
18
B
41 47Right-handed alpha
Helix 19
19
B
73 93Right-handed alpha
Helix 20
20
B
97 121Right-handed alpha
Helix 21
21
B
129 150Right-handed alpha
Helix 22
22
B
173 196Right-handed alpha
Helix 23
23
B
199 218Right-handed alpha
Helix 24
24
B
219 227Right-handed alpha
Helix 25
25
B
234 255Right-handed alpha
Helix 26
26
B
263 282Right-handed alpha
Helix 27
27
B
284 292Right-handed alpha
Helix 28
28
B
292 309Right-handed alpha
Helix 29
29
B
335 355Right-handed alpha
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There are 2 sheets in PDB entry 4J72. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
167 169anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
168 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il