Analysis of interatomic Contacts of Structural Units in PDB entry:
4J7A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J7A entry

There are 4 chains in PDB entry 4J7A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8ALA 362
B
 GLN 8ALA 362
C
 GLN 8ALA 362
D
 GLN 8ASP 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 4J7A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
27 37Right-handed alpha
Helix 3
3
A
53 77Right-handed alpha
Helix 4
4
A
135 148Right-handed alpha
Helix 5
5
A
161 165Right-handed 310
Helix 6
6
A
170 185Right-handed alpha
Helix 7
7
A
186 191Right-handed alpha
Helix 8
8
A
201 217Right-handed alpha
Helix 9
9
A
219 223Right-handed 310
Helix 10
10
A
245 250Right-handed alpha
Helix 11
11
A
256 268Right-handed alpha
Helix 12
12
A
280 284Right-handed 310
Helix 13
13
A
285 290Right-handed alpha
Helix 14
14
A
305 319Right-handed alpha
Helix 15
15
A
334 338Right-handed 310
Helix 16
16
A
343 362Right-handed alpha
Helix 17
17
B
10 15Right-handed alpha
Helix 18
18
B
27 37Right-handed alpha
Helix 19
19
B
53 77Right-handed alpha
Helix 20
20
B
135 148Right-handed alpha
Helix 21
21
B
161 165Right-handed 310
Helix 22
22
B
170 185Right-handed alpha
Helix 23
23
B
186 191Right-handed alpha
Helix 24
24
B
201 218Right-handed alpha
Helix 25
25
B
219 223Right-handed 310
Helix 26
26
B
245 250Right-handed alpha
Helix 27
27
B
256 268Right-handed alpha
Helix 28
28
B
280 284Right-handed 310
Helix 29
29
B
285 290Right-handed alpha
Helix 30
30
B
305 319Right-handed alpha
Helix 31
31
B
334 338Right-handed 310
Helix 32
32
B
343 362Right-handed alpha
Helix 33
33
C
10 15Right-handed alpha
Helix 34
34
C
27 38Right-handed alpha
Helix 35
35
C
53 77Right-handed alpha
Helix 36
36
C
135 148Right-handed alpha
Helix 37
37
C
161 165Right-handed 310
Helix 38
38
C
170 185Right-handed alpha
Helix 39
39
C
186 191Right-handed alpha
Helix 40
40
C
201 218Right-handed alpha
Helix 41
41
C
219 223Right-handed 310
Helix 42
42
C
245 250Right-handed alpha
Helix 43
43
C
256 268Right-handed alpha
Helix 44
44
C
280 284Right-handed 310
Helix 45
45
C
285 290Right-handed alpha
Helix 46
46
C
305 319Right-handed alpha
Helix 47
47
C
334 338Right-handed 310
Helix 48
48
C
343 362Right-handed alpha
Helix 49
49
D
10 15Right-handed alpha
Helix 50
50
D
27 38Right-handed alpha
Helix 51
51
D
53 77Right-handed alpha
Helix 52
52
D
135 148Right-handed alpha
Helix 53
53
D
161 165Right-handed 310
Helix 54
54
D
170 185Right-handed alpha
Helix 55
55
D
186 191Right-handed alpha
Helix 56
56
D
201 218Right-handed alpha
Helix 57
57
D
219 223Right-handed 310
Helix 58
58
D
245 250Right-handed alpha
Helix 59
59
D
256 268Right-handed alpha
Helix 60
60
D
280 284Right-handed 310
Helix 61
61
D
285 290Right-handed alpha
Helix 62
62
D
305 319Right-handed alpha
Helix 63
63
D
334 338Right-handed 310
Helix 64
64
D
343 362Right-handed alpha
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There are 2 sheets in PDB entry 4J7A. Click on sheet of interest to get list of strands forming it: A, B,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 93first strand
Strand 2
A
99 107anti-parallel
Strand 3
A
151 156anti-parallel
Strand 4
A
117 123parallel
Strand 5
A
192 200parallel
Strand 6
A
225 229parallel
Strand 7
A
295 300parallel
Strand 8
A
323 328parallel
Strand 9
D
323 328anti-parallel
Strand 10
D
295 300parallel
Strand 11
D
225 229parallel
Strand 12
D
192 200parallel
Strand 13
D
117 122parallel
Strand 14
D
151 156parallel
Strand 15
D
99 107anti-parallel
Strand 16
D
85 93anti-parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 93first strand
Strand 2
B
99 107anti-parallel
Strand 3
B
151 156anti-parallel
Strand 4
B
117 122parallel
Strand 5
B
192 200parallel
Strand 6
B
225 229parallel
Strand 7
B
295 300parallel
Strand 8
B
323 328parallel
Strand 9
C
323 328anti-parallel
Strand 10
C
295 300parallel
Strand 11
C
225 229parallel
Strand 12
C
192 200parallel
Strand 13
C
117 122parallel
Strand 14
C
151 156parallel
Strand 15
C
99 107anti-parallel
Strand 16
C
85 93anti-parallel
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