Analysis of interatomic Contacts of Structural Units in PDB entry:
4J7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J7F entry

There are 3 chains in PDB entry 4J7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 117ALA 334
A
 GLY 336ALA 362
B
 SER 186ARG 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4J7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
209 214Right-handed alpha
Helix 2
2
A
251 257Right-handed alpha
Helix 3
3
A
259 263Right-handed 310
Helix 4
4
A
291 295Right-handed 310
Helix 5
5
A
350 362Right-handed alpha
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There are 5 sheets in PDB entry 4J7F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
128 132anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
153 160anti-parallel
Strand 5
A
163 176anti-parallel
Strand 6
A
179 184anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
128 132anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
153 160anti-parallel
Strand 5
A
163 176anti-parallel
Strand 6
A
190 191anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
228 232anti-parallel
Strand 3
A
330 333anti-parallel
Strand 4
A
296 297parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 245first strand
Strand 2
A
314 321anti-parallel
Strand 3
A
303 310anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
274 276anti-parallel
Strand 3
A
267 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il