Analysis of interatomic Contacts of Structural Units in PDB entry:
4J7G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J7G entry

There are 2 chains in PDB entry 4J7G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11ARG 468
B
 ALA 11ARG 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4J7G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 30Right-handed alpha
Helix 2
2
A
37 39Right-handed 310
Helix 3
3
A
40 52Right-handed alpha
Helix 4
4
A
60 64Right-handed 310
Helix 5
5
A
155 159Right-handed 310
Helix 6
6
A
170 175Right-handed 310
Helix 7
7
A
178 180Right-handed 310
Helix 8
8
A
222 229Right-handed alpha
Helix 9
9
A
236 244Right-handed alpha
Helix 10
10
A
258 272Right-handed alpha
Helix 11
11
A
281 285Right-handed 310
Helix 12
12
A
369 374Right-handed 310
Helix 13
13
A
377 381Right-handed 310
Helix 14
14
A
384 390Right-handed alpha
Helix 15
15
A
392 394Right-handed 310
Helix 16
16
A
435 443Right-handed alpha
Helix 17
17
A
450 466Right-handed alpha
Helix 18
18
B
20 30Right-handed alpha
Helix 19
19
B
39 51Right-handed alpha
Helix 20
20
B
60 64Right-handed 310
Helix 21
21
B
155 159Right-handed 310
Helix 22
22
B
170 175Right-handed 310
Helix 23
23
B
178 180Right-handed 310
Helix 24
24
B
222 229Right-handed alpha
Helix 25
25
B
236 244Right-handed alpha
Helix 26
26
B
258 272Right-handed alpha
Helix 27
27
B
281 285Right-handed 310
Helix 28
28
B
369 374Right-handed 310
Helix 29
29
B
377 381Right-handed 310
Helix 30
30
B
384 390Right-handed alpha
Helix 31
31
B
392 394Right-handed 310
Helix 32
32
B
435 443Right-handed alpha
Helix 33
33
B
450 466Right-handed alpha
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There are 16 sheets in PDB entry 4J7G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
303 311anti-parallel
Strand 3
A
295 297anti-parallel
Strand 4
A
288 290anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
303 311anti-parallel
Strand 3
A
319 327anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
76 78anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 112first strand
Strand 2
A
85 96anti-parallel
Strand 3
A
274 280anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
129 138anti-parallel
Strand 3
A
118 126anti-parallel
Strand 4
A
199 206parallel
Strand 5
A
182 189anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
118 126anti-parallel
Strand 3
A
129 138anti-parallel
Strand 4
A
217 221anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
343 351anti-parallel
Strand 3
A
331 340anti-parallel
Strand 4
A
413 420parallel
Strand 5
A
396 403anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 368first strand
Strand 2
A
331 340anti-parallel
Strand 3
A
343 351anti-parallel
Strand 4
A
431 434anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
303 311anti-parallel
Strand 3
B
295 297anti-parallel
Strand 4
B
288 290anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
303 311anti-parallel
Strand 3
B
320 327anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
76 78anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 112first strand
Strand 2
B
85 96anti-parallel
Strand 3
B
274 280anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
129 138anti-parallel
Strand 3
B
118 126anti-parallel
Strand 4
B
199 206parallel
Strand 5
B
182 189anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
118 126anti-parallel
Strand 3
B
129 138anti-parallel
Strand 4
B
217 221anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 363first strand
Strand 2
B
343 351anti-parallel
Strand 3
B
331 340anti-parallel
Strand 4
B
413 420parallel
Strand 5
B
396 403anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 368first strand
Strand 2
B
331 340anti-parallel
Strand 3
B
343 351anti-parallel
Strand 4
B
431 434anti-parallel
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