Analysis of interatomic Contacts of Structural Units in PDB entry:
4J7H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J7H entry

There are 2 chains in PDB entry 4J7H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11ARG 468
B
 ALA 11ARG 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4J7H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 30Right-handed alpha
Helix 2
2
A
37 52Right-handed alpha
Helix 3
3
A
60 64Right-handed 310
Helix 4
4
A
155 159Right-handed 310
Helix 5
5
A
170 174Right-handed 310
Helix 6
6
A
178 180Right-handed 310
Helix 7
7
A
222 230Right-handed alpha
Helix 8
8
A
236 245Right-handed alpha
Helix 9
9
A
258 272Right-handed alpha
Helix 10
10
A
281 285Right-handed 310
Helix 11
11
A
369 374Right-handed 310
Helix 12
12
A
377 381Right-handed 310
Helix 13
13
A
384 390Right-handed alpha
Helix 14
14
A
392 394Right-handed 310
Helix 15
15
A
435 443Right-handed alpha
Helix 16
16
A
450 466Right-handed alpha
Helix 17
17
B
20 30Right-handed alpha
Helix 18
18
B
37 39Right-handed 310
Helix 19
19
B
40 52Right-handed alpha
Helix 20
20
B
60 64Right-handed 310
Helix 21
21
B
170 175Right-handed 310
Helix 22
22
B
178 180Right-handed 310
Helix 23
23
B
222 229Right-handed alpha
Helix 24
24
B
236 244Right-handed alpha
Helix 25
25
B
258 272Right-handed alpha
Helix 26
26
B
281 285Right-handed 310
Helix 27
27
B
369 374Right-handed 310
Helix 28
28
B
377 381Right-handed 310
Helix 29
29
B
384 390Right-handed alpha
Helix 30
30
B
392 394Right-handed 310
Helix 31
31
B
435 443Right-handed alpha
Helix 32
32
B
450 466Right-handed alpha
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There are 16 sheets in PDB entry 4J7H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
303 311anti-parallel
Strand 3
A
295 297anti-parallel
Strand 4
A
288 290anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
303 311anti-parallel
Strand 3
A
320 327anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
76 78anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 112first strand
Strand 2
A
85 94anti-parallel
Strand 3
A
274 280anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
129 138anti-parallel
Strand 3
A
117 126anti-parallel
Strand 4
A
199 206parallel
Strand 5
A
182 189anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
117 126anti-parallel
Strand 3
A
129 138anti-parallel
Strand 4
A
217 221anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 363first strand
Strand 2
A
343 352anti-parallel
Strand 3
A
331 340anti-parallel
Strand 4
A
413 420parallel
Strand 5
A
396 403anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 368first strand
Strand 2
A
331 340anti-parallel
Strand 3
A
343 352anti-parallel
Strand 4
A
431 434anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
303 311anti-parallel
Strand 3
B
295 297anti-parallel
Strand 4
B
288 290anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
303 311anti-parallel
Strand 3
B
320 327anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
76 78anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 112first strand
Strand 2
B
85 94anti-parallel
Strand 3
B
274 280anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
129 138anti-parallel
Strand 3
B
118 126anti-parallel
Strand 4
B
199 206parallel
Strand 5
B
182 189anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
118 126anti-parallel
Strand 3
B
129 138anti-parallel
Strand 4
B
217 221anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 363first strand
Strand 2
B
343 352anti-parallel
Strand 3
B
331 340anti-parallel
Strand 4
B
413 420parallel
Strand 5
B
396 403anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 368first strand
Strand 2
B
331 340anti-parallel
Strand 3
B
343 352anti-parallel
Strand 4
B
431 434anti-parallel
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