Analysis of interatomic Contacts of Structural Units in PDB entry:
4J7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J7P entry

There are 2 chains in PDB entry 4J7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 16LYS 345
B
 LYS 16SER 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4J7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 56Right-handed alpha
Helix 2
2
A
78 85Right-handed alpha
Helix 3
3
A
86 97Right-handed alpha
Helix 4
4
A
100 119Right-handed alpha
Helix 5
5
A
124 128Right-handed 310
Helix 6
6
A
132 137Right-handed alpha
Helix 7
7
A
138 141Right-handed 310
Helix 8
8
A
162 165Right-handed 310
Helix 9
9
A
170 187Right-handed alpha
Helix 10
10
A
220 233Right-handed alpha
Helix 11
11
A
246 257Right-handed alpha
Helix 12
12
A
258 260Right-handed 310
Helix 13
13
A
261 266Right-handed alpha
Helix 14
14
A
273 277Right-handed 310
Helix 15
15
A
279 283Right-handed 310
Helix 16
16
A
284 288Right-handed 310
Helix 17
17
A
296 322Right-handed alpha
Helix 18
18
A
329 334Right-handed alpha
Helix 19
19
B
41 57Right-handed alpha
Helix 20
20
B
78 85Right-handed alpha
Helix 21
21
B
86 97Right-handed alpha
Helix 22
22
B
100 119Right-handed alpha
Helix 23
23
B
124 128Right-handed 310
Helix 24
24
B
132 137Right-handed alpha
Helix 25
25
B
138 141Right-handed 310
Helix 26
26
B
162 165Right-handed 310
Helix 27
27
B
170 187Right-handed alpha
Helix 28
28
B
221 233Right-handed alpha
Helix 29
29
B
246 257Right-handed alpha
Helix 30
30
B
258 260Right-handed 310
Helix 31
31
B
261 267Right-handed alpha
Helix 32
32
B
273 277Right-handed 310
Helix 33
33
B
279 283Right-handed 310
Helix 34
34
B
284 288Right-handed 310
Helix 35
35
B
296 322Right-handed alpha
Helix 36
36
B
329 334Right-handed alpha
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There are 6 sheets in PDB entry 4J7P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
291 293parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
74 76anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 150first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
195 200parallel
Strand 4
A
237 243parallel
Strand 5
A
268 269parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
291 293parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
74 76anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 150first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
195 200parallel
Strand 4
B
237 243parallel
Strand 5
B
268 269parallel
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