Analysis of interatomic Contacts of Structural Units in PDB entry:
4J80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J80 entry

There are 4 chains in PDB entry 4J80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 272
B
 ALA 2ARG 272
C
 ALA 2ARG 272
D
 ALA 2ARG 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4J80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 12Right-handed alpha
Helix 2
2
A
18 31Right-handed alpha
Helix 3
3
A
40 58Right-handed alpha
Helix 4
4
A
59 68Right-handed alpha
Helix 5
5
A
89 93Right-handed 310
Helix 6
6
A
94 102Right-handed alpha
Helix 7
7
A
103 105Right-handed 310
Helix 8
8
A
119 126Right-handed alpha
Helix 9
9
A
194 200Right-handed alpha
Helix 10
10
A
255 272Right-handed alpha
Helix 11
11
B
6 12Right-handed alpha
Helix 12
12
B
18 31Right-handed alpha
Helix 13
13
B
41 58Right-handed alpha
Helix 14
14
B
59 68Right-handed alpha
Helix 15
15
B
94 101Right-handed alpha
Helix 16
16
B
102 105Right-handed 310
Helix 17
17
B
119 126Right-handed alpha
Helix 18
18
B
194 200Right-handed alpha
Helix 19
19
B
255 272Right-handed alpha
Helix 20
20
C
6 11Right-handed alpha
Helix 21
21
C
18 34Right-handed alpha
Helix 22
22
C
40 58Right-handed alpha
Helix 23
23
C
59 69Right-handed alpha
Helix 24
24
C
94 102Right-handed alpha
Helix 25
25
C
103 105Right-handed 310
Helix 26
26
C
119 126Right-handed alpha
Helix 27
27
C
194 200Right-handed alpha
Helix 28
28
C
255 272Right-handed alpha
Helix 29
29
D
6 12Right-handed alpha
Helix 30
30
D
18 34Right-handed alpha
Helix 31
31
D
42 58Right-handed alpha
Helix 32
32
D
59 68Right-handed alpha
Helix 33
33
D
89 93Right-handed 310
Helix 34
34
D
96 105Right-handed alpha
Helix 35
35
D
119 126Right-handed alpha
Helix 36
36
D
194 200Right-handed alpha
Helix 37
37
D
255 272Right-handed alpha
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There are 17 sheets in PDB entry 4J80. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 118first strand
Strand 2
A
167 173parallel
Strand 3
A
151 154anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 133first strand
Strand 2
A
136 142anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
185 193anti-parallel
Strand 3
A
242 249parallel
Strand 4
A
225 228anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
211 215anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 118first strand
Strand 2
B
167 173parallel
Strand 3
B
151 154anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 133first strand
Strand 2
B
136 142anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
185 193anti-parallel
Strand 3
B
242 249parallel
Strand 4
B
225 228anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 206first strand
Strand 2
B
211 216anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
238 239anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 118first strand
Strand 2
C
167 173parallel
Strand 3
C
151 154anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 132first strand
Strand 2
C
137 142anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 182first strand
Strand 2
C
185 193anti-parallel
Strand 3
C
242 249parallel
Strand 4
C
225 228anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 206first strand
Strand 2
C
211 216anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 118first strand
Strand 2
D
167 173parallel
Strand 3
D
151 154anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 133first strand
Strand 2
D
136 142anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
180 182first strand
Strand 2
D
185 193anti-parallel
Strand 3
D
242 249parallel
Strand 4
D
225 228anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
201 206first strand
Strand 2
D
211 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il