Analysis of interatomic Contacts of Structural Units in PDB entry:
4J8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J8D entry

There are 4 chains in PDB entry 4J8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 81ARG 241
B
 ILE 82LYS 240
C
 ILE 82ARG 241
D
 GLU 81GLU 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4J8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
106 127Right-handed alpha
Helix 2
2
A
128 141Right-handed alpha
Helix 3
3
A
146 160Right-handed alpha
Helix 4
4
A
162 175Right-handed alpha
Helix 5
5
A
181 195Right-handed alpha
Helix 6
6
A
196 212Right-handed alpha
Helix 7
7
A
213 241Right-handed alpha
Helix 8
8
B
106 127Right-handed alpha
Helix 9
9
B
128 141Right-handed alpha
Helix 10
10
B
146 160Right-handed alpha
Helix 11
11
B
162 175Right-handed alpha
Helix 12
12
B
181 195Right-handed alpha
Helix 13
13
B
196 212Right-handed alpha
Helix 14
14
B
213 239Right-handed alpha
Helix 15
15
C
106 126Right-handed alpha
Helix 16
16
C
128 143Right-handed alpha
Helix 17
17
C
146 160Right-handed alpha
Helix 18
18
C
162 177Right-handed alpha
Helix 19
19
C
180 192Right-handed alpha
Helix 20
20
C
193 195Right-handed 310
Helix 21
21
C
196 211Right-handed alpha
Helix 22
22
C
213 241Right-handed alpha
Helix 23
23
D
106 126Right-handed alpha
Helix 24
24
D
128 141Right-handed alpha
Helix 25
25
D
146 160Right-handed alpha
Helix 26
26
D
162 177Right-handed alpha
Helix 27
27
D
180 194Right-handed alpha
Helix 28
28
D
196 211Right-handed alpha
Helix 29
29
D
213 241Right-handed alpha
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There are no sheets in PDB entry 4J8D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il