Analysis of interatomic Contacts of Structural Units in PDB entry:
4J8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J8F entry

There is 1 chain in PDB entry 4J8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 0GLU 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 4J8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 58Right-handed alpha
Helix 2
2
A
59 64Right-handed 310
Helix 3
3
A
69 74Right-handed alpha
Helix 4
4
A
80 88Right-handed alpha
Helix 5
5
A
115 136Right-handed alpha
Helix 6
6
A
151 165Right-handed alpha
Helix 7
7
A
175 183Right-handed alpha
Helix 8
8
A
229 250Right-handed alpha
Helix 9
9
A
256 277Right-handed alpha
Helix 10
10
A
299 306Right-handed alpha
Helix 11
11
A
306 312Right-handed alpha
Helix 12
12
A
314 325Right-handed alpha
Helix 13
13
A
327 331Right-handed 310
Helix 14
14
A
338 342Right-handed 310
Helix 15
15
A
343 354Right-handed alpha
Helix 16
16
A
367 383Right-handed alpha
Helix 17
17
A
384 387Right-handed 310
Helix 18
18
A
413 434Right-handed alpha
Helix 19
19
A
435 450Right-handed alpha
Helix 20
20
A
453 467Right-handed alpha
Helix 21
21
A
469 484Right-handed alpha
Helix 22
22
A
488 501Right-handed alpha
Helix 23
23
A
503 518Right-handed alpha
Helix 24
24
A
520 550Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4J8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
38 39anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
7 11anti-parallel
Strand 4
A
141 146parallel
Strand 5
A
168 174parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
66 67anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
110 114anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 225first strand
Strand 2
A
205 213anti-parallel
Strand 3
A
193 200anti-parallel
Strand 4
A
333 337parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 288first strand
Strand 2
A
291 298anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il