Analysis of interatomic Contacts of Structural Units in PDB entry:
4J8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J8L entry

There are 2 chains in PDB entry 4J8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PHE 195
A
 LEU 197ILE 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4J8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 29Right-handed alpha
Helix 2
2
A
30 35Right-handed alpha
Helix 3
3
A
49 63Right-handed alpha
Helix 4
4
A
73 87Right-handed alpha
Helix 5
5
A
101 112Right-handed alpha
Helix 6
6
A
122 134Right-handed alpha
Helix 7
7
A
152 163Right-handed alpha
Helix 8
8
A
181 185Right-handed 310
Helix 9
9
A
195 198Right-handed 310
Helix 10
10
A
209 220Right-handed alpha
Helix 11
11
A
228 262Right-handed alpha
Helix 12
12
A
289 300Right-handed alpha
Helix 13
13
A
323 330Right-handed alpha
Helix 14
14
A
332 335Right-handed 310
Helix 15
15
A
346 361Right-handed alpha
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There are 2 sheets in PDB entry 4J8L. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
189 193anti-parallel
Strand 4
A
167 170parallel
Strand 5
A
137 141parallel
Strand 6
A
92 96parallel
Strand 7
A
114 118parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 275first strand
Strand 2
A
279 285anti-parallel
Strand 3
A
337 341anti-parallel
Strand 4
A
318 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il