Analysis of interatomic Contacts of Structural Units in PDB entry:
4J8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J8P entry

There is 1 chain in PDB entry 4J8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 23LYS 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4J8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 50Right-handed alpha
Helix 2
2
A
74 82Right-handed alpha
Helix 3
3
A
114 122Right-handed alpha
Helix 4
4
A
142 153Right-handed alpha
Helix 5
5
A
168 178Right-handed alpha
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There are 2 sheets in PDB entry 4J8P. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
26 31parallel
Strand 3
A
99 107parallel
Strand 4
A
130 136parallel
Strand 5
A
157 158parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
26 31parallel
Strand 3
A
99 107parallel
Strand 4
A
130 136parallel
Strand 5
A
162 163parallel
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