Analysis of interatomic Contacts of Structural Units in PDB entry:
4J8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J8R entry

There are 6 chains in PDB entry 4J8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ARG 209
B
 VAL 2ARG 212
I
 PRO 1PRO 9
C
 ASP 1ALA 210
D
 VAL 2ARG 212
J
 PRO 1GLN 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4J8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 82Right-handed 310
Helix 2
2
A
119 125Right-handed alpha
Helix 3
3
A
181 187Right-handed alpha
Helix 4
4
B
28 30Right-handed 310
Helix 5
5
B
61 64Right-handed 310
Helix 6
6
B
83 87Right-handed 310
Helix 7
7
B
155 157Right-handed 310
Helix 8
8
B
185 190Right-handed alpha
Helix 9
9
C
78 82Right-handed 310
Helix 10
10
C
119 124Right-handed alpha
Helix 11
11
C
181 187Right-handed alpha
Helix 12
12
D
28 30Right-handed 310
Helix 13
13
D
61 64Right-handed 310
Helix 14
14
D
83 87Right-handed 310
Helix 15
15
D
183 187Right-handed 310
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There are 22 sheets in PDB entry 4J8R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
69 74anti-parallel
Strand 4
A
61 66anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
100 104parallel
Strand 3
A
84 89anti-parallel
Strand 4
A
32 37anti-parallel
Strand 5
A
44 48anti-parallel
Strand 6
A
52 53anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
100 104parallel
Strand 3
A
84 89anti-parallel
Strand 4
A
95 96anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
127 137anti-parallel
Strand 3
A
171 180anti-parallel
Strand 4
A
157 161anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
143 148anti-parallel
Strand 3
A
189 196anti-parallel
Strand 4
A
199 208anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
107 111parallel
Strand 3
B
88 97anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
107 111parallel
Strand 3
B
88 97anti-parallel
Strand 4
B
102 103anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
134 144anti-parallel
Strand 3
B
174 183anti-parallel
Strand 4
B
162 164anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
134 144anti-parallel
Strand 3
B
174 183anti-parallel
Strand 4
B
168 169anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
193 198anti-parallel
Strand 3
B
203 208anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
69 74anti-parallel
Strand 4
C
61 64anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
100 104parallel
Strand 3
C
84 89anti-parallel
Strand 4
C
32 37anti-parallel
Strand 5
C
44 48anti-parallel
Strand 6
C
52 53anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
100 104parallel
Strand 3
C
84 89anti-parallel
Strand 4
C
95 96anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 116first strand
Strand 2
C
127 137anti-parallel
Strand 3
C
171 180anti-parallel
Strand 4
C
157 161anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 152first strand
Strand 2
C
143 148anti-parallel
Strand 3
C
189 195anti-parallel
Strand 4
C
203 208anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
67 72anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
107 111parallel
Strand 3
D
88 97anti-parallel
Strand 4
D
32 39anti-parallel
Strand 5
D
46 51anti-parallel
Strand 6
D
57 59anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
107 111parallel
Strand 3
D
88 97anti-parallel
Strand 4
D
102 103anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 124first strand
Strand 2
D
135 144anti-parallel
Strand 3
D
173 182anti-parallel
Strand 4
D
162 164anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 124first strand
Strand 2
D
135 144anti-parallel
Strand 3
D
173 182anti-parallel
Strand 4
D
168 170anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
150 153first strand
Strand 2
D
193 198anti-parallel
Strand 3
D
203 208anti-parallel
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