Analysis of interatomic Contacts of Structural Units in PDB entry:
4J8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J8Z entry

There are 2 chains in PDB entry 4J8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 178LEU 356
B
 MET 178ARG 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 4J8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
185 196Right-handed alpha
Helix 2
2
A
214 222Right-handed alpha
Helix 3
3
A
222 232Right-handed alpha
Helix 4
4
A
234 238Right-handed 310
Helix 5
5
A
247 261Right-handed alpha
Helix 6
6
A
265 268Right-handed 310
Helix 7
7
A
269 280Right-handed alpha
Helix 8
8
A
282 296Right-handed alpha
Helix 9
9
A
301 312Right-handed alpha
Helix 10
10
A
314 328Right-handed alpha
Helix 11
11
A
328 334Right-handed alpha
Helix 12
12
A
335 345Right-handed alpha
Helix 13
13
A
345 355Right-handed alpha
Helix 14
14
B
185 196Right-handed alpha
Helix 15
15
B
214 222Right-handed alpha
Helix 16
16
B
222 232Right-handed alpha
Helix 17
17
B
247 261Right-handed alpha
Helix 18
18
B
265 268Right-handed 310
Helix 19
19
B
269 280Right-handed alpha
Helix 20
20
B
282 296Right-handed alpha
Helix 21
21
B
301 312Right-handed alpha
Helix 22
22
B
314 328Right-handed alpha
Helix 23
23
B
328 334Right-handed alpha
Helix 24
24
B
335 345Right-handed alpha
Helix 25
25
B
345 354Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4J8Z. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 213first strand
Strand 2
A
202 206anti-parallel
Strand 3
A
240 243parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 213first strand
Strand 2
B
202 206anti-parallel
Strand 3
B
240 243parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il