Analysis of interatomic Contacts of Structural Units in PDB entry:
4J97

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4J97 entry

There are 4 chains in PDB entry 4J97 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 468	THR 764
B	LEU 468	THR 764
C	GLU 467	THR 764
D	TYR 466	THR 764

There are 50 helices in PDB entry 4J97. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	477	479	Right-handed 310
Helix 2	2	A	524	542	Right-handed alpha
Helix 3	3	A	571	578	Right-handed alpha
Helix 4	4	A	599	620	Right-handed alpha
Helix 5	5	A	628	630	Right-handed 310
Helix 6	6	A	666	670	Right-handed 310
Helix 7	7	A	671	677	Right-handed alpha
Helix 8	8	A	681	698	Right-handed alpha
Helix 9	9	A	708	718	Right-handed alpha
Helix 10	10	A	729	740	Right-handed alpha
Helix 11	11	A	743	747	Right-handed 310
Helix 12	12	A	749	763	Right-handed alpha
Helix 13	13	B	477	479	Right-handed 310
Helix 14	14	B	524	542	Right-handed alpha
Helix 15	15	B	571	579	Right-handed alpha
Helix 16	16	B	593	597	Right-handed 310
Helix 17	17	B	599	620	Right-handed alpha
Helix 18	18	B	628	630	Right-handed 310
Helix 19	19	B	666	670	Right-handed 310
Helix 20	20	B	671	677	Right-handed alpha
Helix 21	21	B	681	697	Right-handed alpha
Helix 22	22	B	708	718	Right-handed alpha
Helix 23	23	B	729	740	Right-handed alpha
Helix 24	24	B	743	747	Right-handed 310
Helix 25	25	B	749	763	Right-handed alpha
Helix 26	26	C	477	479	Right-handed 310
Helix 27	27	C	524	542	Right-handed alpha
Helix 28	28	C	571	579	Right-handed alpha
Helix 29	29	C	593	597	Right-handed 310
Helix 30	30	C	599	620	Right-handed alpha
Helix 31	31	C	628	630	Right-handed 310
Helix 32	32	C	666	670	Right-handed 310
Helix 33	33	C	671	677	Right-handed alpha
Helix 34	34	C	681	698	Right-handed alpha
Helix 35	35	C	708	718	Right-handed alpha
Helix 36	36	C	729	740	Right-handed alpha
Helix 37	37	C	743	747	Right-handed 310
Helix 38	38	C	749	763	Right-handed alpha
Helix 39	39	D	477	479	Right-handed 310
Helix 40	40	D	524	542	Right-handed alpha
Helix 41	41	D	571	578	Right-handed alpha
Helix 42	42	D	599	620	Right-handed alpha
Helix 43	43	D	628	630	Right-handed 310
Helix 44	44	D	666	670	Right-handed 310
Helix 45	45	D	671	677	Right-handed alpha
Helix 46	46	D	681	698	Right-handed alpha
Helix 47	47	D	708	718	Right-handed alpha
Helix 48	48	D	731	740	Right-handed alpha
Helix 49	49	D	743	747	Right-handed 310
Helix 50	50	D	749	763	Right-handed alpha

There are 16 sheets in PDB entry 4J97. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	488	first strand
Strand 2	A	494	501	anti-parallel
Strand 3	A	511	518	anti-parallel
Strand 4	A	561	565	anti-parallel
Strand 5	A	550	554	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	623	first strand
Strand 2	A	649	650	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	635	first strand
Strand 2	A	639	642	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	658	first strand
Strand 2	A	679	680	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	488	first strand
Strand 2	B	494	501	anti-parallel
Strand 3	B	511	518	anti-parallel
Strand 4	B	561	565	anti-parallel
Strand 5	B	550	554	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	622	623	first strand
Strand 2	B	649	650	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	634	first strand
Strand 2	B	640	642	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	657	658	first strand
Strand 2	B	679	680	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	488	first strand
Strand 2	C	493	501	anti-parallel
Strand 3	C	511	519	anti-parallel
Strand 4	C	561	565	anti-parallel
Strand 5	C	550	554	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	622	623	first strand
Strand 2	C	649	650	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	634	first strand
Strand 2	C	640	642	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	657	658	first strand
Strand 2	C	679	680	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	481	486	first strand
Strand 2	D	495	501	anti-parallel
Strand 3	D	511	517	anti-parallel
Strand 4	D	561	564	anti-parallel
Strand 5	D	550	554	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	622	623	first strand
Strand 2	D	649	650	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	632	635	first strand
Strand 2	D	639	642	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	657	658	first strand
Strand 2	D	679	680	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4J97

Analysis of interatomic Contacts of Structural Units in PDB entry:
4J97