Analysis of interatomic Contacts of Structural Units in PDB entry:
4J9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J9A entry

There are 9 chains in PDB entry 4J9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ARG 123
B
 ASN 2VAL 124
C
 ASN 2ARG 123
D
 MET 1LEU 125
E
 ASN 2VAL 124
F
 ASN 2GLU 126
G
 ASN 2ARG 123
H
 ASN 2ARG 123
I
 MET 1ARG 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4J9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 16Right-handed alpha
Helix 2
2
A
18 25Right-handed alpha
Helix 3
3
A
47 56Right-handed alpha
Helix 4
4
A
57 61Right-handed alpha
Helix 5
5
B
3 16Right-handed alpha
Helix 6
6
B
18 25Right-handed alpha
Helix 7
7
B
47 57Right-handed alpha
Helix 8
8
B
57 61Right-handed alpha
Helix 9
9
C
3 16Right-handed alpha
Helix 10
10
C
18 25Right-handed alpha
Helix 11
11
C
47 57Right-handed alpha
Helix 12
12
C
57 61Right-handed alpha
Helix 13
13
D
2 16Right-handed alpha
Helix 14
14
D
18 25Right-handed alpha
Helix 15
15
D
47 57Right-handed alpha
Helix 16
16
D
57 61Right-handed alpha
Helix 17
17
E
3 16Right-handed alpha
Helix 18
18
E
18 25Right-handed alpha
Helix 19
19
E
47 57Right-handed alpha
Helix 20
20
E
57 62Right-handed alpha
Helix 21
21
F
3 16Right-handed alpha
Helix 22
22
F
18 25Right-handed alpha
Helix 23
23
F
47 57Right-handed alpha
Helix 24
24
F
57 61Right-handed alpha
Helix 25
25
F
120 125Right-handed alpha
Helix 26
26
G
3 16Right-handed alpha
Helix 27
27
G
19 25Right-handed alpha
Helix 28
28
G
47 57Right-handed alpha
Helix 29
29
G
57 62Right-handed alpha
Helix 30
30
H
3 16Right-handed alpha
Helix 31
31
H
18 25Right-handed alpha
Helix 32
32
H
47 57Right-handed alpha
Helix 33
33
H
57 62Right-handed alpha
Helix 34
34
I
2 16Right-handed alpha
Helix 35
35
I
18 25Right-handed alpha
Helix 36
36
I
47 57Right-handed alpha
Helix 37
37
I
57 62Right-handed alpha
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There are 15 sheets in PDB entry 4J9A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
26 33anti-parallel
Strand 3
A
111 118parallel
Strand 4
A
96 108anti-parallel
Strand 5
A
79 90anti-parallel
Strand 6
A
62 66anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
26 33anti-parallel
Strand 3
A
111 118parallel
Strand 4
A
96 108anti-parallel
Strand 5
A
79 90anti-parallel
Strand 6
A
70 72anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
26 33anti-parallel
Strand 3
B
112 118parallel
Strand 4
B
96 106anti-parallel
Strand 5
B
79 90anti-parallel
Strand 6
B
62 72anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 46first strand
Strand 2
C
26 33anti-parallel
Strand 3
C
111 118parallel
Strand 4
C
96 108anti-parallel
Strand 5
C
79 90anti-parallel
Strand 6
C
62 66anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 46first strand
Strand 2
C
26 33anti-parallel
Strand 3
C
111 118parallel
Strand 4
C
96 108anti-parallel
Strand 5
C
79 90anti-parallel
Strand 6
C
70 72anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 46first strand
Strand 2
D
26 33anti-parallel
Strand 3
D
111 118parallel
Strand 4
D
96 108anti-parallel
Strand 5
D
79 90anti-parallel
Strand 6
D
62 66anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 46first strand
Strand 2
D
26 33anti-parallel
Strand 3
D
111 118parallel
Strand 4
D
96 108anti-parallel
Strand 5
D
79 90anti-parallel
Strand 6
D
70 72anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 46first strand
Strand 2
E
26 33anti-parallel
Strand 3
E
112 118parallel
Strand 4
E
97 106anti-parallel
Strand 5
E
79 89anti-parallel
Strand 6
E
63 66anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 46first strand
Strand 2
E
26 33anti-parallel
Strand 3
E
112 118parallel
Strand 4
E
97 106anti-parallel
Strand 5
E
79 89anti-parallel
Strand 6
E
70 72anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 46first strand
Strand 2
F
26 33anti-parallel
Strand 3
F
111 118parallel
Strand 4
F
97 108anti-parallel
Strand 5
F
79 90anti-parallel
Strand 6
F
62 66anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 46first strand
Strand 2
F
26 33anti-parallel
Strand 3
F
111 118parallel
Strand 4
F
97 108anti-parallel
Strand 5
F
79 90anti-parallel
Strand 6
F
70 72anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
44 46first strand
Strand 2
G
26 33anti-parallel
Strand 3
G
111 118parallel
Strand 4
G
101 108anti-parallel
Strand 5
G
79 84anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
44 46first strand
Strand 2
H
26 33anti-parallel
Strand 3
H
111 118parallel
Strand 4
H
99 108anti-parallel
Strand 5
H
79 86anti-parallel
Strand 6
H
70 72anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
44 46first strand
Strand 2
I
26 33anti-parallel
Strand 3
I
111 118parallel
Strand 4
I
101 108anti-parallel
Strand 5
I
79 84anti-parallel
Strand 6
I
70 72anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
65 66first strand
Strand 2
I
86 87anti-parallel
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