Analysis of interatomic Contacts of Structural Units in PDB entry:
4J9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J9H entry

There are 12 chains in PDB entry 4J9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 62ASN 120
B
 ASN 64VAL 119
C
 ASN 64VAL 119
D
 ASN 64ASN 120
E
 ASP 62ASN 120
F
 ASN 64VAL 119
G
 ALA 1PRO 10
H
 ALA 1PRO 10
I
 ALA 1PRO 10
J
 ALA 1PRO 10
K
 ALA 1PRO 10
L
 ALA 1PRO 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 4J9H

There are 6 sheets in PDB entry 4J9H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 112first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
65 68anti-parallel
Strand 5
A
116 118anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 112first strand
Strand 2
B
99 104anti-parallel
Strand 3
B
87 93anti-parallel
Strand 4
B
65 68anti-parallel
Strand 5
B
116 118anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 112first strand
Strand 2
C
99 104anti-parallel
Strand 3
C
87 93anti-parallel
Strand 4
C
65 68anti-parallel
Strand 5
C
116 118anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 112first strand
Strand 2
D
99 104anti-parallel
Strand 3
D
87 93anti-parallel
Strand 4
D
65 68anti-parallel
Strand 5
D
116 120anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
107 112first strand
Strand 2
E
99 104anti-parallel
Strand 3
E
87 94anti-parallel
Strand 4
F
87 93anti-parallel
Strand 5
F
99 104anti-parallel
Strand 6
F
107 112anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 118first strand
Strand 2
E
65 68anti-parallel
Strand 3
E
87 94anti-parallel
Strand 4
F
87 93anti-parallel
Strand 5
F
65 68anti-parallel
Strand 6
F
116 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il