Analysis of interatomic Contacts of Structural Units in PDB entry:
4J9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J9J entry

There is 1 chain in PDB entry 4J9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 0PHE 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4J9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
14 25Right-handed alpha
Helix 3
3
A
57 68Right-handed alpha
Helix 4
4
A
87 95Right-handed alpha
Helix 5
5
A
96 98Right-handed 310
Helix 6
6
A
110 121Right-handed alpha
Helix 7
7
A
128 134Right-handed alpha
Helix 8
8
A
135 145Right-handed alpha
Helix 9
9
A
146 148Right-handed 310
Helix 10
10
A
178 189Right-handed alpha
Helix 11
11
A
208 216Right-handed alpha
Helix 12
12
A
217 219Right-handed 310
Helix 13
13
A
234 239Right-handed alpha
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There are 2 sheets in PDB entry 4J9J. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
41 46anti-parallel
Strand 3
A
29 38anti-parallel
Strand 4
A
3 6parallel
Strand 5
A
223 225parallel
Strand 6
A
192 197parallel
Strand 7
A
150 159parallel
Strand 8
A
162 167anti-parallel
Strand 9
A
172 177anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
41 46anti-parallel
Strand 3
A
29 38anti-parallel
Strand 4
A
71 75parallel
Strand 5
A
102 105parallel
Strand 6
A
124 127parallel
Strand 7
A
150 159parallel
Strand 8
A
162 167anti-parallel
Strand 9
A
172 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il