Analysis of interatomic Contacts of Structural Units in PDB entry:
4J9U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4J9U entry

There are 3 chains in PDB entry 4J9U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 484
B	MET 1	ARG 484
C	MET 1	PRO 392

There are168 helices in PDB entry 4J9U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	19	Right-handed alpha
Helix 2	2	A	36	55	Right-handed alpha
Helix 3	3	A	67	79	Right-handed alpha
Helix 4	4	A	79	84	Right-handed alpha
Helix 5	5	A	86	91	Right-handed alpha
Helix 6	6	A	97	110	Right-handed alpha
Helix 7	7	A	119	123	Right-handed 310
Helix 8	8	A	124	145	Right-handed alpha
Helix 9	9	A	148	153	Right-handed alpha
Helix 10	10	A	179	203	Right-handed alpha
Helix 11	11	A	206	219	Right-handed alpha
Helix 12	12	A	228	232	Right-handed 310
Helix 13	13	A	235	250	Right-handed alpha
Helix 14	14	A	252	257	Right-handed alpha
Helix 15	15	A	265	273	Right-handed alpha
Helix 16	16	A	273	297	Right-handed alpha
Helix 17	17	A	304	319	Right-handed alpha
Helix 18	18	A	333	343	Right-handed alpha
Helix 19	19	A	357	377	Right-handed alpha
Helix 20	20	A	395	421	Right-handed alpha
Helix 21	21	A	423	435	Right-handed alpha
Helix 22	22	A	453	469	Right-handed alpha
Helix 23	23	A	471	476	Right-handed alpha
Helix 24	24	A	477	483	Right-handed 310
Helix 25	25	B	5	19	Right-handed alpha
Helix 26	26	B	36	55	Right-handed alpha
Helix 27	27	B	67	79	Right-handed alpha
Helix 28	28	B	79	84	Right-handed alpha
Helix 29	29	B	86	91	Right-handed alpha
Helix 30	30	B	97	110	Right-handed alpha
Helix 31	31	B	119	123	Right-handed 310
Helix 32	32	B	124	145	Right-handed alpha
Helix 33	33	B	148	153	Right-handed alpha
Helix 34	34	B	179	203	Right-handed alpha
Helix 35	35	B	206	219	Right-handed alpha
Helix 36	36	B	228	232	Right-handed 310
Helix 37	37	B	235	250	Right-handed alpha
Helix 38	38	B	252	257	Right-handed alpha
Helix 39	39	B	265	273	Right-handed alpha
Helix 40	40	B	273	297	Right-handed alpha
Helix 41	41	B	302	319	Right-handed alpha
Helix 42	42	B	333	343	Right-handed alpha
Helix 43	43	B	357	377	Right-handed alpha
Helix 44	44	B	395	421	Right-handed alpha
Helix 45	45	B	423	435	Right-handed alpha
Helix 46	46	B	453	469	Right-handed alpha
Helix 47	47	B	471	476	Right-handed alpha
Helix 48	48	B	477	483	Right-handed 310
Helix 49	49	C	2	19	Right-handed alpha
Helix 50	50	C	36	55	Right-handed alpha
Helix 51	51	C	67	79	Right-handed alpha
Helix 52	52	C	79	84	Right-handed alpha
Helix 53	53	C	86	91	Right-handed alpha
Helix 54	54	C	97	110	Right-handed alpha
Helix 55	55	C	124	145	Right-handed alpha
Helix 56	56	C	148	153	Right-handed alpha
Helix 57	57	C	179	203	Right-handed alpha
Helix 58	58	C	206	219	Right-handed alpha
Helix 59	59	C	228	232	Right-handed 310
Helix 60	60	C	235	250	Right-handed alpha
Helix 61	61	C	252	261	Right-handed alpha
Helix 62	62	C	266	273	Right-handed alpha
Helix 63	63	C	273	297	Right-handed alpha
Helix 64	64	C	304	319	Right-handed alpha
Helix 65	65	C	333	343	Right-handed alpha
Helix 66	66	C	357	377	Right-handed alpha
Helix 67	67	C	395	421	Right-handed alpha
Helix 68	68	C	423	435	Right-handed alpha
Helix 69	69	C	453	469	Right-handed alpha
Helix 70	70	C	471	476	Right-handed alpha
Helix 71	71	C	477	483	Right-handed 310
Helix 72	72	D	5	19	Right-handed alpha
Helix 73	73	D	36	55	Right-handed alpha
Helix 74	74	D	67	79	Right-handed alpha
Helix 75	75	D	79	84	Right-handed alpha
Helix 76	76	D	86	91	Right-handed alpha
Helix 77	77	D	97	110	Right-handed alpha
Helix 78	78	D	119	123	Right-handed 310
Helix 79	79	D	126	145	Right-handed alpha
Helix 80	80	D	148	153	Right-handed alpha
Helix 81	81	D	179	203	Right-handed alpha
Helix 82	82	D	206	219	Right-handed alpha
Helix 83	83	D	228	232	Right-handed 310
Helix 84	84	D	235	250	Right-handed alpha
Helix 85	85	D	252	257	Right-handed alpha
Helix 86	86	D	266	273	Right-handed alpha
Helix 87	87	D	273	297	Right-handed alpha
Helix 88	88	D	302	319	Right-handed alpha
Helix 89	89	D	333	343	Right-handed alpha
Helix 90	90	D	357	377	Right-handed alpha
Helix 91	91	D	395	421	Right-handed alpha
Helix 92	92	D	423	435	Right-handed alpha
Helix 93	93	D	453	469	Right-handed alpha
Helix 94	94	D	471	476	Right-handed alpha
Helix 95	95	D	477	483	Right-handed 310
Helix 96	96	E	9	20	Right-handed alpha
Helix 97	97	E	32	44	Right-handed alpha
Helix 98	98	E	54	62	Right-handed alpha
Helix 99	99	E	75	91	Right-handed alpha
Helix 100	100	E	104	106	Right-handed 310
Helix 101	101	E	107	112	Right-handed alpha
Helix 102	102	E	124	139	Right-handed alpha
Helix 103	103	E	168	173	Right-handed alpha
Helix 104	104	E	174	176	Right-handed 310
Helix 105	105	E	217	225	Right-handed alpha
Helix 106	106	E	241	252	Right-handed alpha
Helix 107	107	E	263	274	Right-handed alpha
Helix 108	108	E	286	293	Right-handed alpha
Helix 109	109	E	307	321	Right-handed alpha
Helix 110	110	E	332	339	Right-handed alpha
Helix 111	111	E	353	360	Right-handed alpha
Helix 112	112	E	398	402	Right-handed 310
Helix 113	113	E	440	442	Right-handed 310
Helix 114	114	E	443	451	Right-handed alpha
Helix 115	115	F	9	20	Right-handed alpha
Helix 116	116	F	33	44	Right-handed alpha
Helix 117	117	F	54	62	Right-handed alpha
Helix 118	118	F	75	91	Right-handed alpha
Helix 119	119	F	104	106	Right-handed 310
Helix 120	120	F	107	113	Right-handed alpha
Helix 121	121	F	124	139	Right-handed alpha
Helix 122	122	F	168	177	Right-handed alpha
Helix 123	123	F	217	225	Right-handed alpha
Helix 124	124	F	241	252	Right-handed alpha
Helix 125	125	F	263	274	Right-handed alpha
Helix 126	126	F	286	293	Right-handed alpha
Helix 127	127	F	307	321	Right-handed alpha
Helix 128	128	F	332	339	Right-handed alpha
Helix 129	129	F	353	360	Right-handed alpha
Helix 130	130	F	398	402	Right-handed 310
Helix 131	131	F	440	442	Right-handed 310
Helix 132	132	F	443	450	Right-handed alpha
Helix 133	133	G	9	20	Right-handed alpha
Helix 134	134	G	32	44	Right-handed alpha
Helix 135	135	G	54	62	Right-handed alpha
Helix 136	136	G	75	91	Right-handed alpha
Helix 137	137	G	104	106	Right-handed 310
Helix 138	138	G	107	112	Right-handed alpha
Helix 139	139	G	124	139	Right-handed alpha
Helix 140	140	G	168	173	Right-handed alpha
Helix 141	141	G	217	225	Right-handed alpha
Helix 142	142	G	241	252	Right-handed alpha
Helix 143	143	G	263	274	Right-handed alpha
Helix 144	144	G	286	293	Right-handed alpha
Helix 145	145	G	307	321	Right-handed alpha
Helix 146	146	G	332	339	Right-handed alpha
Helix 147	147	G	353	360	Right-handed alpha
Helix 148	148	G	398	402	Right-handed 310
Helix 149	149	G	440	442	Right-handed 310
Helix 150	150	G	443	451	Right-handed alpha
Helix 151	151	H	9	20	Right-handed alpha
Helix 152	152	H	33	44	Right-handed alpha
Helix 153	153	H	54	62	Right-handed alpha
Helix 154	154	H	75	91	Right-handed alpha
Helix 155	155	H	104	106	Right-handed 310
Helix 156	156	H	107	112	Right-handed alpha
Helix 157	157	H	124	139	Right-handed alpha
Helix 158	158	H	168	177	Right-handed alpha
Helix 159	159	H	218	225	Right-handed alpha
Helix 160	160	H	241	252	Right-handed alpha
Helix 161	161	H	263	274	Right-handed alpha
Helix 162	162	H	286	293	Right-handed alpha
Helix 163	163	H	307	321	Right-handed alpha
Helix 164	164	H	332	339	Right-handed alpha
Helix 165	165	H	353	360	Right-handed alpha
Helix 166	166	H	398	402	Right-handed 310
Helix 167	167	H	440	442	Right-handed 310
Helix 168	168	H	443	450	Right-handed alpha

There are 16 sheets in PDB entry 4J9U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	G	278	281	anti-parallel
Strand 3	G	256	261	parallel
Strand 4	G	234	238	parallel
Strand 5	G	300	303	parallel
Strand 6	G	325	329	parallel
Strand 7	G	346	348	parallel

Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	E	278	281	anti-parallel
Strand 3	E	256	261	parallel
Strand 4	E	234	238	parallel
Strand 5	E	300	303	parallel
Strand 6	E	325	329	parallel
Strand 7	E	346	348	parallel

Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	381	first strand
Strand 2	F	278	281	anti-parallel
Strand 3	F	256	261	parallel
Strand 4	F	234	238	parallel
Strand 5	F	300	303	parallel
Strand 6	F	325	329	parallel
Strand 7	F	346	348	parallel

Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	381	first strand
Strand 2	H	278	281	anti-parallel
Strand 3	H	256	261	parallel
Strand 4	H	234	238	parallel
Strand 5	H	300	303	parallel
Strand 6	H	325	329	parallel
Strand 7	H	346	348	parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	49	first strand
Strand 2	E	25	30	parallel
Strand 3	E	2	6	parallel
Strand 4	E	68	71	parallel
Strand 5	E	94	97	parallel
Strand 6	E	121	122	parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	147	first strand
Strand 2	E	153	159	anti-parallel
Strand 3	E	208	214	anti-parallel
Strand 4	E	184	189	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	367	372	first strand
Strand 2	E	379	384	anti-parallel
Strand 3	E	433	438	anti-parallel
Strand 4	E	408	415	anti-parallel
Strand 5	E	418	421	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	49	first strand
Strand 2	F	25	30	parallel
Strand 3	F	2	6	parallel
Strand 4	F	68	71	parallel
Strand 5	F	94	97	parallel
Strand 6	F	121	122	parallel

Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	147	first strand
Strand 2	F	153	159	anti-parallel
Strand 3	F	208	214	anti-parallel
Strand 4	F	183	189	anti-parallel
Strand 5	F	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	367	372	first strand
Strand 2	F	379	384	anti-parallel
Strand 3	F	433	438	anti-parallel
Strand 4	F	408	415	anti-parallel
Strand 5	F	418	420	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	49	first strand
Strand 2	G	25	30	parallel
Strand 3	G	2	6	parallel
Strand 4	G	68	71	parallel
Strand 5	G	94	97	parallel
Strand 6	G	121	122	parallel

Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	147	first strand
Strand 2	G	153	159	anti-parallel
Strand 3	G	208	214	anti-parallel
Strand 4	G	184	189	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	367	372	first strand
Strand 2	G	379	384	anti-parallel
Strand 3	G	433	438	anti-parallel
Strand 4	G	408	415	anti-parallel
Strand 5	G	418	421	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	49	first strand
Strand 2	H	25	30	parallel
Strand 3	H	2	6	parallel
Strand 4	H	68	71	parallel
Strand 5	H	94	97	parallel
Strand 6	H	121	122	parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	147	first strand
Strand 2	H	153	159	anti-parallel
Strand 3	H	208	214	anti-parallel
Strand 4	H	184	189	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	367	372	first strand
Strand 2	H	379	384	anti-parallel
Strand 3	H	433	438	anti-parallel
Strand 4	H	408	415	anti-parallel
Strand 5	H	418	421	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4J9U

Analysis of interatomic Contacts of Structural Units in PDB entry:
4J9U