Analysis of interatomic Contacts of Structural Units in PDB entry:
4J9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J9V entry

There are 2 chains in PDB entry 4J9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 456
B
 MET 1SER 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4J9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
32 43Right-handed alpha
Helix 3
3
A
54 61Right-handed alpha
Helix 4
4
A
75 91Right-handed alpha
Helix 5
5
A
101 106Right-handed alpha
Helix 6
6
A
107 112Right-handed alpha
Helix 7
7
A
124 139Right-handed alpha
Helix 8
8
A
170 175Right-handed alpha
Helix 9
9
A
217 224Right-handed alpha
Helix 10
10
A
241 252Right-handed alpha
Helix 11
11
A
263 274Right-handed alpha
Helix 12
12
A
286 293Right-handed alpha
Helix 13
13
A
307 321Right-handed alpha
Helix 14
14
A
332 340Right-handed alpha
Helix 15
15
A
349 363Right-handed alpha
Helix 16
16
A
398 402Right-handed 310
Helix 17
17
A
440 442Right-handed 310
Helix 18
18
A
443 452Right-handed alpha
Helix 19
19
B
9 20Right-handed alpha
Helix 20
20
B
32 43Right-handed alpha
Helix 21
21
B
54 61Right-handed alpha
Helix 22
22
B
75 91Right-handed alpha
Helix 23
23
B
101 107Right-handed alpha
Helix 24
24
B
107 112Right-handed alpha
Helix 25
25
B
124 139Right-handed alpha
Helix 26
26
B
170 176Right-handed alpha
Helix 27
27
B
217 224Right-handed alpha
Helix 28
28
B
241 253Right-handed alpha
Helix 29
29
B
263 274Right-handed alpha
Helix 30
30
B
286 293Right-handed alpha
Helix 31
31
B
307 321Right-handed alpha
Helix 32
32
B
332 334Right-handed 310
Helix 33
33
B
335 340Right-handed alpha
Helix 34
34
B
349 365Right-handed alpha
Helix 35
35
B
374 377Right-handed 310
Helix 36
36
B
398 402Right-handed 310
Helix 37
37
B
440 442Right-handed 310
Helix 38
38
B
443 452Right-handed alpha
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There are 8 sheets in PDB entry 4J9V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
25 30parallel
Strand 3
A
2 6parallel
Strand 4
A
68 71parallel
Strand 5
A
95 98parallel
Strand 6
A
121 123parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
153 159anti-parallel
Strand 3
A
208 214anti-parallel
Strand 4
A
185 190anti-parallel
Strand 5
A
193 195anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 280first strand
Strand 2
A
256 260parallel
Strand 3
A
234 238parallel
Strand 4
A
300 303parallel
Strand 5
A
325 329parallel
Strand 6
A
346 348parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 375first strand
Strand 2
A
378 384anti-parallel
Strand 3
A
433 438anti-parallel
Strand 4
A
408 415anti-parallel
Strand 5
A
418 421anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
25 30parallel
Strand 3
B
2 6parallel
Strand 4
B
68 71parallel
Strand 5
B
95 98parallel
Strand 6
B
121 123parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
153 159anti-parallel
Strand 3
B
208 214anti-parallel
Strand 4
B
184 190anti-parallel
Strand 5
B
193 195anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 281first strand
Strand 2
B
256 261parallel
Strand 3
B
234 238parallel
Strand 4
B
300 303parallel
Strand 5
B
325 329parallel
Strand 6
B
346 348parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
379 384anti-parallel
Strand 3
B
433 438anti-parallel
Strand 4
B
408 415anti-parallel
Strand 5
B
418 421anti-parallel
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