Analysis of interatomic Contacts of Structural Units in PDB entry:
4J9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J9W entry

There are 2 chains in PDB entry 4J9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 310
B
 MET 1SER 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4J9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 51Right-handed alpha
Helix 2
2
A
88 102Right-handed alpha
Helix 3
3
A
175 177Right-handed 310
Helix 4
4
A
178 197Right-handed alpha
Helix 5
5
A
200 204Right-handed 310
Helix 6
6
A
236 250Right-handed alpha
Helix 7
7
B
30 51Right-handed alpha
Helix 8
8
B
88 102Right-handed alpha
Helix 9
9
B
175 177Right-handed 310
Helix 10
10
B
178 197Right-handed alpha
Helix 11
11
B
200 204Right-handed 310
Helix 12
12
B
236 250Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4J9W.

There are 32 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 145first strand
Strand 2
A
153 159anti-parallel
Strand 3
A
163 167anti-parallel
Strand 4
A
208 215parallel
Strand 5
A
218 225anti-parallel
Strand 6
A
259 262parallel
Strand 7
A
268 276anti-parallel
Strand 8
A
279 286anti-parallel
Strand 9
A
129 132anti-parallel
Strand 10
A
117 123anti-parallel
Strand 11
A
108 114anti-parallel
Strand 12
A
74 79parallel
Strand 13
A
60 65anti-parallel
Strand 14
A
14 21parallel
Strand 15
A
2 11anti-parallel
Strand 16
A
288 298anti-parallel
Strand 17
B
288 298anti-parallel
Strand 18
B
2 11anti-parallel
Strand 19
B
14 21anti-parallel
Strand 20
B
60 65parallel
Strand 21
B
74 79anti-parallel
Strand 22
B
108 114parallel
Strand 23
B
117 123anti-parallel
Strand 24
B
129 132anti-parallel
Strand 25
B
279 286anti-parallel
Strand 26
B
268 276anti-parallel
Strand 27
B
259 262anti-parallel
Strand 28
B
218 225parallel
Strand 29
B
208 215anti-parallel
Strand 30
B
163 167parallel
Strand 31
B
151 159anti-parallel
Strand 32
B
137 147anti-parallel
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