Analysis of interatomic Contacts of Structural Units in PDB entry:
4JAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JAF entry

There are 2 chains in PDB entry 4JAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ARG 426
B
 ALA 1001ARG 1426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4JAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 80Right-handed alpha
Helix 2
2
A
81 92Right-handed alpha
Helix 3
3
A
96 109Right-handed alpha
Helix 4
4
A
114 122Right-handed alpha
Helix 5
5
A
129 145Right-handed alpha
Helix 6
6
A
146 149Right-handed 310
Helix 7
7
A
153 180Right-handed alpha
Helix 8
8
A
192 203Right-handed alpha
Helix 9
9
A
212 225Right-handed alpha
Helix 10
10
A
232 243Right-handed alpha
Helix 11
11
A
247 261Right-handed alpha
Helix 12
12
A
262 265Right-handed 310
Helix 13
13
A
266 276Right-handed alpha
Helix 14
14
A
298 302Right-handed 310
Helix 15
15
A
314 329Right-handed alpha
Helix 16
16
A
334 336Right-handed 310
Helix 17
17
A
337 349Right-handed alpha
Helix 18
18
A
349 356Right-handed alpha
Helix 19
19
A
360 372Right-handed alpha
Helix 20
20
A
375 377Right-handed 310
Helix 21
21
A
378 403Right-handed alpha
Helix 22
22
B
1034 1038Right-handed 310
Helix 23
23
B
1044 1047Right-handed 310
Helix 24
24
B
1073 1080Right-handed alpha
Helix 25
25
B
1081 1092Right-handed alpha
Helix 26
26
B
1096 1109Right-handed alpha
Helix 27
27
B
1114 1120Right-handed alpha
Helix 28
28
B
1121 1124Right-handed 310
Helix 29
29
B
1129 1139Right-handed alpha
Helix 30
30
B
1140 1144Right-handed 310
Helix 31
31
B
1145 1149Right-handed 310
Helix 32
32
B
1153 1181Right-handed alpha
Helix 33
33
B
1192 1203Right-handed alpha
Helix 34
34
B
1212 1227Right-handed alpha
Helix 35
35
B
1232 1245Right-handed alpha
Helix 36
36
B
1247 1261Right-handed alpha
Helix 37
37
B
1262 1264Right-handed 310
Helix 38
38
B
1267 1277Right-handed alpha
Helix 39
39
B
1314 1330Right-handed alpha
Helix 40
40
B
1333 1337Right-handed 310
Helix 41
41
B
1338 1349Right-handed alpha
Helix 42
42
B
1349 1355Right-handed alpha
Helix 43
43
B
1360 1373Right-handed alpha
Helix 44
44
B
1375 1401Right-handed alpha
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There are 4 sheets in PDB entry 4JAF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
28 30anti-parallel
Strand 4
B
1040 1042parallel
Strand 5
A
49 54parallel
Strand 6
B
1409 1412parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 412first strand
Strand 2
B
1049 1054parallel
Strand 3
A
41 42parallel
Strand 4
B
1028 1030parallel
Strand 5
B
1014 1020anti-parallel
Strand 6
B
1006 1010anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
65 68anti-parallel
Strand 3
A
71 72anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1057 1060first strand
Strand 2
B
1065 1068anti-parallel
Strand 3
B
1071 1072anti-parallel
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