Analysis of interatomic Contacts of Structural Units in PDB entry:
4JAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JAP entry

There are 4 chains in PDB entry 4JAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 SER 2ARG 353
C
 MET 1ARG 353
B
 SER 2ARG 353
A
 MET 1ARG 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 4JAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
18 26Right-handed alpha
Helix 2
2
D
34 45Right-handed alpha
Helix 3
3
D
58 62Right-handed 310
Helix 4
4
D
64 91Right-handed alpha
Helix 5
5
D
94 98Right-handed 310
Helix 6
6
D
113 123Right-handed alpha
Helix 7
7
D
136 138Right-handed 310
Helix 8
8
D
139 154Right-handed alpha
Helix 9
9
D
169 175Right-handed 310
Helix 10
10
D
178 188Right-handed alpha
Helix 11
11
D
199 204Right-handed alpha
Helix 12
12
D
224 226Right-handed 310
Helix 13
13
D
244 263Right-handed alpha
Helix 14
14
D
267 270Right-handed 310
Helix 15
15
D
280 292Right-handed alpha
Helix 16
16
D
298 309Right-handed alpha
Helix 17
17
D
311 313Right-handed 310
Helix 18
18
D
314 326Right-handed alpha
Helix 19
19
C
18 26Right-handed alpha
Helix 20
20
C
31 33Right-handed 310
Helix 21
21
C
34 45Right-handed alpha
Helix 22
22
C
55 62Right-handed 310
Helix 23
23
C
64 91Right-handed alpha
Helix 24
24
C
94 98Right-handed 310
Helix 25
25
C
113 123Right-handed alpha
Helix 26
26
C
136 138Right-handed 310
Helix 27
27
C
139 154Right-handed alpha
Helix 28
28
C
169 175Right-handed 310
Helix 29
29
C
178 188Right-handed alpha
Helix 30
30
C
199 206Right-handed alpha
Helix 31
31
C
244 262Right-handed alpha
Helix 32
32
C
263 265Right-handed 310
Helix 33
33
C
267 269Right-handed 310
Helix 34
34
C
280 291Right-handed alpha
Helix 35
35
C
298 309Right-handed alpha
Helix 36
36
C
311 313Right-handed 310
Helix 37
37
C
314 327Right-handed alpha
Helix 38
38
B
18 26Right-handed alpha
Helix 39
39
B
31 33Right-handed 310
Helix 40
40
B
34 45Right-handed alpha
Helix 41
41
B
55 62Right-handed 310
Helix 42
42
B
64 91Right-handed alpha
Helix 43
43
B
94 98Right-handed 310
Helix 44
44
B
113 123Right-handed alpha
Helix 45
45
B
136 138Right-handed 310
Helix 46
46
B
139 153Right-handed alpha
Helix 47
47
B
169 175Right-handed 310
Helix 48
48
B
178 188Right-handed alpha
Helix 49
49
B
202 207Right-handed alpha
Helix 50
50
B
224 226Right-handed 310
Helix 51
51
B
244 263Right-handed alpha
Helix 52
52
B
280 291Right-handed alpha
Helix 53
53
B
298 309Right-handed alpha
Helix 54
54
B
311 313Right-handed 310
Helix 55
55
B
314 326Right-handed alpha
Helix 56
56
A
18 26Right-handed alpha
Helix 57
57
A
31 33Right-handed 310
Helix 58
58
A
34 44Right-handed alpha
Helix 59
59
A
55 62Right-handed 310
Helix 60
60
A
64 91Right-handed alpha
Helix 61
61
A
94 98Right-handed 310
Helix 62
62
A
113 123Right-handed alpha
Helix 63
63
A
136 138Right-handed 310
Helix 64
64
A
139 154Right-handed alpha
Helix 65
65
A
169 175Right-handed 310
Helix 66
66
A
178 188Right-handed alpha
Helix 67
67
A
200 204Right-handed alpha
Helix 68
68
A
224 226Right-handed 310
Helix 69
69
A
244 263Right-handed alpha
Helix 70
70
A
280 291Right-handed alpha
Helix 71
71
A
298 309Right-handed alpha
Helix 72
72
A
311 313Right-handed 310
Helix 73
73
A
314 326Right-handed alpha
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There are 15 sheets in PDB entry 4JAP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 10first strand
Strand 2
D
190 198anti-parallel
Strand 3
D
159 167anti-parallel
Strand 4
D
100 105parallel
Strand 5
D
130 134parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 17first strand
Strand 2
D
49 51anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 220first strand
Strand 2
D
344 351anti-parallel
Strand 3
D
333 340anti-parallel
Strand 4
D
271 276parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
228 233first strand
Strand 2
D
236 241anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 10first strand
Strand 2
C
190 198anti-parallel
Strand 3
C
159 167anti-parallel
Strand 4
C
100 105parallel
Strand 5
C
129 134parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
49 52anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 220first strand
Strand 2
C
344 351anti-parallel
Strand 3
C
333 340anti-parallel
Strand 4
C
271 276parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 233first strand
Strand 2
C
236 241anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 10first strand
Strand 2
B
190 198anti-parallel
Strand 3
B
159 167anti-parallel
Strand 4
B
100 105parallel
Strand 5
B
130 134parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
49 52anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 220first strand
Strand 2
B
344 351anti-parallel
Strand 3
B
333 340anti-parallel
Strand 4
B
271 276parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 233first strand
Strand 2
B
236 241anti-parallel
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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
100 105parallel
Strand 3
A
159 167parallel
Strand 4
A
190 199anti-parallel
Strand 5
A
2 10anti-parallel
Strand 6
A
212 220anti-parallel
Strand 7
A
344 351anti-parallel
Strand 8
A
333 340anti-parallel
Strand 9
A
271 276parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
49 51anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 233first strand
Strand 2
A
236 241anti-parallel
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