Analysis of interatomic Contacts of Structural Units in PDB entry:
4JAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JAQ entry

There are 4 chains in PDB entry 4JAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 SER 2ARG 353
A
 SER 2ARG 353
C
 SER 2ARG 353
B
 SER 2ARG 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 4JAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
18 26Right-handed alpha
Helix 2
2
D
31 33Right-handed 310
Helix 3
3
D
34 44Right-handed alpha
Helix 4
4
D
55 62Right-handed 310
Helix 5
5
D
64 92Right-handed alpha
Helix 6
6
D
94 98Right-handed 310
Helix 7
7
D
113 123Right-handed alpha
Helix 8
8
D
136 138Right-handed 310
Helix 9
9
D
139 155Right-handed alpha
Helix 10
10
D
169 175Right-handed 310
Helix 11
11
D
178 188Right-handed alpha
Helix 12
12
D
199 204Right-handed alpha
Helix 13
13
D
244 263Right-handed alpha
Helix 14
14
D
267 269Right-handed 310
Helix 15
15
D
280 291Right-handed alpha
Helix 16
16
D
298 309Right-handed alpha
Helix 17
17
D
311 313Right-handed 310
Helix 18
18
D
314 326Right-handed alpha
Helix 19
56
A
18 26Right-handed alpha
Helix 20
57
A
31 33Right-handed 310
Helix 21
58
A
34 44Right-handed alpha
Helix 22
59
A
55 62Right-handed 310
Helix 23
60
A
64 92Right-handed alpha
Helix 24
61
A
94 98Right-handed 310
Helix 25
62
A
113 123Right-handed alpha
Helix 26
63
A
136 138Right-handed 310
Helix 27
64
A
139 155Right-handed alpha
Helix 28
65
A
169 175Right-handed 310
Helix 29
66
A
178 188Right-handed alpha
Helix 30
67
A
202 207Right-handed alpha
Helix 31
68
A
224 226Right-handed 310
Helix 32
69
A
244 263Right-handed alpha
Helix 33
70
A
267 269Right-handed 310
Helix 34
71
A
280 292Right-handed alpha
Helix 35
72
A
298 309Right-handed alpha
Helix 36
73
A
311 313Right-handed 310
Helix 37
74
A
314 326Right-handed alpha
Helix 38
19
C
18 26Right-handed alpha
Helix 39
20
C
31 33Right-handed 310
Helix 40
21
C
34 45Right-handed alpha
Helix 41
22
C
55 62Right-handed 310
Helix 42
23
C
64 92Right-handed alpha
Helix 43
24
C
94 98Right-handed 310
Helix 44
25
C
113 123Right-handed alpha
Helix 45
26
C
136 138Right-handed 310
Helix 46
27
C
139 154Right-handed alpha
Helix 47
28
C
169 175Right-handed 310
Helix 48
29
C
178 188Right-handed alpha
Helix 49
30
C
199 207Right-handed alpha
Helix 50
31
C
244 263Right-handed alpha
Helix 51
32
C
267 269Right-handed 310
Helix 52
33
C
280 292Right-handed alpha
Helix 53
34
C
294 297Right-handed 310
Helix 54
35
C
298 309Right-handed alpha
Helix 55
36
C
311 313Right-handed 310
Helix 56
37
C
314 327Right-handed alpha
Helix 57
38
B
18 26Right-handed alpha
Helix 58
39
B
31 33Right-handed 310
Helix 59
40
B
34 45Right-handed alpha
Helix 60
41
B
55 62Right-handed 310
Helix 61
42
B
64 92Right-handed alpha
Helix 62
43
B
94 98Right-handed 310
Helix 63
44
B
113 123Right-handed alpha
Helix 64
45
B
136 138Right-handed 310
Helix 65
46
B
139 153Right-handed alpha
Helix 66
47
B
169 175Right-handed 310
Helix 67
48
B
178 188Right-handed alpha
Helix 68
49
B
199 207Right-handed alpha
Helix 69
50
B
244 264Right-handed alpha
Helix 70
51
B
267 269Right-handed 310
Helix 71
52
B
280 291Right-handed alpha
Helix 72
53
B
298 309Right-handed alpha
Helix 73
54
B
311 313Right-handed 310
Helix 74
55
B
314 327Right-handed alpha
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There are 16 sheets in PDB entry 4JAQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 10first strand
Strand 2
D
190 198anti-parallel
Strand 3
D
159 167anti-parallel
Strand 4
D
100 105parallel
Strand 5
D
129 134parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 17first strand
Strand 2
D
49 51anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 220first strand
Strand 2
D
344 351anti-parallel
Strand 3
D
333 340anti-parallel
Strand 4
D
271 276parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
228 233first strand
Strand 2
D
236 241anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 10first strand
Strand 2
C
190 198anti-parallel
Strand 3
C
159 167anti-parallel
Strand 4
C
100 105parallel
Strand 5
C
129 134parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
49 52anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 220first strand
Strand 2
C
344 351anti-parallel
Strand 3
C
333 340anti-parallel
Strand 4
C
271 276parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 233first strand
Strand 2
C
236 241anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 10first strand
Strand 2
B
190 198anti-parallel
Strand 3
B
159 167anti-parallel
Strand 4
B
100 105parallel
Strand 5
B
129 134parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
49 52anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 220first strand
Strand 2
B
344 351anti-parallel
Strand 3
B
333 340anti-parallel
Strand 4
B
271 276parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 233first strand
Strand 2
B
236 241anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
190 198anti-parallel
Strand 3
A
159 167anti-parallel
Strand 4
A
100 105parallel
Strand 5
A
129 134parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
49 51anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 220first strand
Strand 2
A
344 351anti-parallel
Strand 3
A
333 340anti-parallel
Strand 4
A
271 276parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 233first strand
Strand 2
A
236 241anti-parallel
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