Analysis of interatomic Contacts of Structural Units in PDB entry:
4JAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JAV entry

There are 6 chains in PDB entry 4JAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 234ASP 479
B
 THR 236ASP 479
C
 SER 2LEU 52
C
 ILE 54GLU 122
D
 SER 2LEU 52
D
 ILE 54ASN 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4JAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
236 279Right-handed alpha
Helix 2
2
A
280 283Right-handed 310
Helix 3
3
A
284 316Right-handed alpha
Helix 4
4
A
329 339Right-handed alpha
Helix 5
5
A
340 346Right-handed alpha
Helix 6
6
A
366 384Right-handed alpha
Helix 7
7
A
417 421Right-handed 310
Helix 8
8
A
422 426Right-handed 310
Helix 9
9
A
444 456Right-handed alpha
Helix 10
10
B
237 279Right-handed alpha
Helix 11
11
B
284 317Right-handed alpha
Helix 12
12
B
329 346Right-handed alpha
Helix 13
13
B
366 384Right-handed alpha
Helix 14
14
B
417 421Right-handed 310
Helix 15
15
B
422 426Right-handed 310
Helix 16
16
B
444 456Right-handed alpha
Helix 17
17
C
11 25Right-handed alpha
Helix 18
18
C
34 45Right-handed alpha
Helix 19
19
C
60 71Right-handed alpha
Helix 20
20
C
73 77Right-handed 310
Helix 21
21
C
87 97Right-handed alpha
Helix 22
22
C
108 121Right-handed alpha
Helix 23
23
D
11 26Right-handed alpha
Helix 24
24
D
34 43Right-handed alpha
Helix 25
25
D
60 71Right-handed alpha
Helix 26
26
D
73 77Right-handed 310
Helix 27
27
D
88 97Right-handed alpha
Helix 28
28
D
108 119Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4JAV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
362 365anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 355first strand
Strand 2
A
392 400parallel
Strand 3
A
404 411anti-parallel
Strand 4
A
469 477anti-parallel
Strand 5
A
459 465anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 328first strand
Strand 2
B
362 365anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 355first strand
Strand 2
B
392 399parallel
Strand 3
B
405 411anti-parallel
Strand 4
B
469 476anti-parallel
Strand 5
B
459 465anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 32first strand
Strand 2
C
4 8parallel
Strand 3
C
49 52parallel
Strand 4
C
79 83parallel
Strand 5
C
101 104parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 32first strand
Strand 2
D
4 8parallel
Strand 3
D
49 52parallel
Strand 4
D
79 83parallel
Strand 5
D
101 104parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il