Analysis of interatomic Contacts of Structural Units in PDB entry:
4JAW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JAW entry

There are 2 chains in PDB entry 4JAW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30SER 662
B
 SER 30VAL 661
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 4JAW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
83 99Right-handed alpha
Helix 2
2
A
122 127Right-handed alpha
Helix 3
3
A
146 162Right-handed alpha
Helix 4
4
A
194 208Right-handed alpha
Helix 5
5
A
226 230Right-handed 310
Helix 6
6
A
236 250Right-handed alpha
Helix 7
7
A
264 269Right-handed alpha
Helix 8
8
A
271 273Right-handed 310
Helix 9
9
A
292 308Right-handed alpha
Helix 10
10
A
327 330Right-handed 310
Helix 11
11
A
331 343Right-handed alpha
Helix 12
12
A
347 365Right-handed alpha
Helix 13
13
A
375 377Right-handed 310
Helix 14
14
A
400 408Right-handed alpha
Helix 15
15
A
415 417Right-handed 310
Helix 16
16
A
430 437Right-handed alpha
Helix 17
17
A
468 472Right-handed 310
Helix 18
18
A
473 494Right-handed alpha
Helix 19
19
A
501 513Right-handed alpha
Helix 20
20
A
515 521Right-handed alpha
Helix 21
21
A
533 537Right-handed 310
Helix 22
22
A
598 600Right-handed 310
Helix 23
23
A
601 607Right-handed alpha
Helix 24
24
A
640 646Right-handed alpha
Helix 25
25
A
657 661Right-handed 310
Helix 26
26
B
83 99Right-handed alpha
Helix 27
27
B
122 127Right-handed alpha
Helix 28
28
B
146 162Right-handed alpha
Helix 29
29
B
194 208Right-handed alpha
Helix 30
30
B
226 230Right-handed 310
Helix 31
31
B
236 250Right-handed alpha
Helix 32
32
B
264 269Right-handed alpha
Helix 33
33
B
271 273Right-handed 310
Helix 34
34
B
292 308Right-handed alpha
Helix 35
35
B
327 330Right-handed 310
Helix 36
36
B
331 343Right-handed alpha
Helix 37
37
B
347 365Right-handed alpha
Helix 38
38
B
375 377Right-handed 310
Helix 39
39
B
400 408Right-handed alpha
Helix 40
40
B
415 417Right-handed 310
Helix 41
41
B
430 437Right-handed alpha
Helix 42
42
B
468 472Right-handed 310
Helix 43
43
B
473 494Right-handed alpha
Helix 44
44
B
501 513Right-handed alpha
Helix 45
45
B
515 520Right-handed alpha
Helix 46
46
B
533 537Right-handed 310
Helix 47
47
B
598 600Right-handed 310
Helix 48
48
B
601 607Right-handed alpha
Helix 49
49
B
640 646Right-handed alpha
Helix 50
50
B
657 661Right-handed 310
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There are 18 sheets in PDB entry 4JAW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
B
529 532anti-parallel
Strand 3
B
544 548anti-parallel
Strand 4
B
554 558anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
63 70anti-parallel
Strand 3
A
167 175anti-parallel
Strand 4
A
131 136anti-parallel
Strand 5
A
139 144anti-parallel
Strand 6
A
114 118parallel
Strand 7
A
76 78parallel
Strand 8
A
103 105parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
457 465parallel
Strand 3
A
411 413parallel
Strand 4
A
390 393parallel
Strand 5
A
369 373parallel
Strand 6
A
314 318parallel
Strand 7
A
253 260parallel
Strand 8
A
212 216parallel
Strand 9
A
181 187parallel
Strand 10
A
457 465parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
283 288anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
448 449anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 558first strand
Strand 2
A
544 548anti-parallel
Strand 3
A
529 532anti-parallel
Strand 4
B
34 35anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 566first strand
Strand 2
A
585 587anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
576 577anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 614first strand
Strand 2
A
620 624anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 633first strand
Strand 2
A
653 656anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
63 70anti-parallel
Strand 3
B
167 175anti-parallel
Strand 4
B
131 136anti-parallel
Strand 5
B
139 144anti-parallel
Strand 6
B
114 118parallel
Strand 7
B
76 79parallel
Strand 8
B
103 106parallel
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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 421first strand
Strand 2
B
457 465parallel
Strand 3
B
411 413parallel
Strand 4
B
390 393parallel
Strand 5
B
369 373parallel
Strand 6
B
314 318parallel
Strand 7
B
253 260parallel
Strand 8
B
212 216parallel
Strand 9
B
181 187parallel
Strand 10
B
457 465parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 277first strand
Strand 2
B
283 288anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 444first strand
Strand 2
B
448 449anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 566first strand
Strand 2
B
585 587anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
572 573first strand
Strand 2
B
576 577anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
610 614first strand
Strand 2
B
620 624anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
630 633first strand
Strand 2
B
653 656anti-parallel
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