Analysis of interatomic Contacts of Structural Units in PDB entry:
4JAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JAX entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 4JAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 16GLY 484
B
 LYS 13GLY 14
B
 MET 16GLY 484
C
 ALA 11GLY 14
C
 MET 16ILE 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are113 helices in PDB entry 4JAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 35Right-handed alpha
Helix 2
2
A
37 57Right-handed alpha
Helix 3
3
A
115 121Right-handed 310
Helix 4
4
A
122 142Right-handed alpha
Helix 5
5
A
187 199Right-handed alpha
Helix 6
6
A
209 222Right-handed alpha
Helix 7
7
A
244 250Right-handed 310
Helix 8
8
A
268 272Right-handed 310
Helix 9
9
A
282 291Right-handed alpha
Helix 10
10
A
298 305Right-handed alpha
Helix 11
11
A
308 323Right-handed alpha
Helix 12
12
A
332 337Right-handed 310
Helix 13
13
A
343 351Right-handed alpha
Helix 14
14
A
357 369Right-handed alpha
Helix 15
15
A
373 406Right-handed alpha
Helix 16
16
A
417 423Right-handed alpha
Helix 17
17
A
425 439Right-handed alpha
Helix 18
18
A
444 448Right-handed 310
Helix 19
19
A
460 476Right-handed alpha
Helix 20
20
B
20 35Right-handed alpha
Helix 21
21
B
37 57Right-handed alpha
Helix 22
22
B
115 121Right-handed 310
Helix 23
23
B
122 142Right-handed alpha
Helix 24
24
B
187 198Right-handed alpha
Helix 25
25
B
209 222Right-handed alpha
Helix 26
26
B
244 250Right-handed 310
Helix 27
27
B
268 272Right-handed 310
Helix 28
28
B
282 292Right-handed alpha
Helix 29
29
B
298 305Right-handed alpha
Helix 30
30
B
308 323Right-handed alpha
Helix 31
31
B
332 337Right-handed 310
Helix 32
32
B
343 352Right-handed alpha
Helix 33
33
B
357 369Right-handed alpha
Helix 34
34
B
373 407Right-handed alpha
Helix 35
35
B
417 423Right-handed alpha
Helix 36
36
B
425 439Right-handed alpha
Helix 37
37
B
444 448Right-handed 310
Helix 38
38
B
460 476Right-handed alpha
Helix 39
39
C
20 35Right-handed alpha
Helix 40
40
C
37 57Right-handed alpha
Helix 41
41
C
115 121Right-handed 310
Helix 42
42
C
122 142Right-handed alpha
Helix 43
43
C
186 198Right-handed alpha
Helix 44
44
C
209 222Right-handed alpha
Helix 45
45
C
244 250Right-handed 310
Helix 46
46
C
268 272Right-handed 310
Helix 47
47
C
282 291Right-handed alpha
Helix 48
48
C
298 305Right-handed alpha
Helix 49
49
C
308 323Right-handed alpha
Helix 50
50
C
332 337Right-handed 310
Helix 51
51
C
343 352Right-handed alpha
Helix 52
52
C
357 369Right-handed alpha
Helix 53
53
C
373 407Right-handed alpha
Helix 54
54
C
417 423Right-handed alpha
Helix 55
55
C
425 439Right-handed alpha
Helix 56
56
C
444 448Right-handed 310
Helix 57
57
C
460 476Right-handed alpha
Helix 58
58
D
20 35Right-handed alpha
Helix 59
59
D
37 57Right-handed alpha
Helix 60
60
D
115 119Right-handed 310
Helix 61
61
D
122 142Right-handed alpha
Helix 62
62
D
186 198Right-handed alpha
Helix 63
63
D
209 222Right-handed alpha
Helix 64
64
D
244 250Right-handed 310
Helix 65
65
D
268 272Right-handed 310
Helix 66
66
D
282 292Right-handed alpha
Helix 67
67
D
298 305Right-handed alpha
Helix 68
68
D
308 323Right-handed alpha
Helix 69
69
D
332 337Right-handed 310
Helix 70
70
D
343 352Right-handed alpha
Helix 71
71
D
357 369Right-handed alpha
Helix 72
72
D
373 407Right-handed alpha
Helix 73
73
D
417 423Right-handed alpha
Helix 74
74
D
425 439Right-handed alpha
Helix 75
75
D
444 448Right-handed 310
Helix 76
76
D
460 475Right-handed alpha
Helix 77
77
E
20 35Right-handed alpha
Helix 78
78
E
37 57Right-handed alpha
Helix 79
79
E
115 121Right-handed 310
Helix 80
80
E
122 142Right-handed alpha
Helix 81
81
E
186 198Right-handed alpha
Helix 82
82
E
209 222Right-handed alpha
Helix 83
83
E
244 250Right-handed 310
Helix 84
84
E
268 272Right-handed 310
Helix 85
85
E
282 291Right-handed alpha
Helix 86
86
E
298 305Right-handed alpha
Helix 87
87
E
308 323Right-handed alpha
Helix 88
88
E
332 337Right-handed 310
Helix 89
89
E
343 352Right-handed alpha
Helix 90
90
E
357 369Right-handed alpha
Helix 91
91
E
373 407Right-handed alpha
Helix 92
92
E
417 423Right-handed alpha
Helix 93
93
E
425 439Right-handed alpha
Helix 94
94
E
444 448Right-handed 310
Helix 95
95
E
460 476Right-handed alpha
Helix 96
96
F
20 35Right-handed alpha
Helix 97
97
F
37 56Right-handed alpha
Helix 98
98
F
125 142Right-handed alpha
Helix 99
99
F
186 199Right-handed alpha
Helix 100
100
F
209 222Right-handed alpha
Helix 101
101
F
244 250Right-handed 310
Helix 102
102
F
268 272Right-handed 310
Helix 103
103
F
282 292Right-handed alpha
Helix 104
104
F
298 305Right-handed alpha
Helix 105
105
F
308 323Right-handed alpha
Helix 106
106
F
332 337Right-handed 310
Helix 107
107
F
343 352Right-handed alpha
Helix 108
108
F
357 369Right-handed alpha
Helix 109
109
F
373 407Right-handed alpha
Helix 110
110
F
417 423Right-handed alpha
Helix 111
111
F
425 439Right-handed alpha
Helix 112
112
F
444 448Right-handed 310
Helix 113
113
F
460 476Right-handed alpha
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There are 18 sheets in PDB entry 4JAX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
262 266anti-parallel
Strand 3
A
235 242anti-parallel
Strand 4
A
225 231anti-parallel
Strand 5
A
411 416parallel
Strand 6
A
450 454parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 113first strand
Strand 2
A
91 100anti-parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
150 156parallel
Strand 5
A
202 208parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
169 170anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
262 266anti-parallel
Strand 3
B
235 242anti-parallel
Strand 4
B
225 231anti-parallel
Strand 5
B
411 416parallel
Strand 6
B
450 454parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 113first strand
Strand 2
B
91 100anti-parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
150 156parallel
Strand 5
B
202 208parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
169 170anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
262 266anti-parallel
Strand 3
C
235 242anti-parallel
Strand 4
C
225 231anti-parallel
Strand 5
C
411 416parallel
Strand 6
C
450 454parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 113first strand
Strand 2
C
91 100anti-parallel
Strand 3
C
79 87anti-parallel
Strand 4
C
150 156parallel
Strand 5
C
202 208parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 161first strand
Strand 2
C
169 170anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
262 266anti-parallel
Strand 3
D
235 242anti-parallel
Strand 4
D
225 231anti-parallel
Strand 5
D
411 416parallel
Strand 6
D
450 454parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 113first strand
Strand 2
D
91 100anti-parallel
Strand 3
D
79 87anti-parallel
Strand 4
D
150 156parallel
Strand 5
D
202 208parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 161first strand
Strand 2
D
169 170anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 67first strand
Strand 2
E
262 266anti-parallel
Strand 3
E
235 242anti-parallel
Strand 4
E
225 231anti-parallel
Strand 5
E
411 416parallel
Strand 6
E
450 454parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
105 113first strand
Strand 2
E
91 100anti-parallel
Strand 3
E
79 87anti-parallel
Strand 4
E
150 156parallel
Strand 5
E
202 208parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
160 161first strand
Strand 2
E
169 170anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
66 67first strand
Strand 2
F
262 266anti-parallel
Strand 3
F
235 242anti-parallel
Strand 4
F
225 231anti-parallel
Strand 5
F
411 416parallel
Strand 6
F
450 454parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
105 113first strand
Strand 2
F
91 99anti-parallel
Strand 3
F
80 87anti-parallel
Strand 4
F
150 155parallel
Strand 5
F
202 208parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
160 161first strand
Strand 2
F
169 170anti-parallel
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