Analysis of interatomic Contacts of Structural Units in PDB entry:
4JAY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JAY entry

There are 4 chains in PDB entry 4JAY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	TYR 339
B	SER 2	TYR 339
C	SER 2	TYR 339
D	SER 2	TYR 264

There are 44 helices in PDB entry 4JAY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	15	Right-handed 310
Helix 2	2	A	31	46	Right-handed alpha
Helix 3	3	A	95	106	Right-handed alpha
Helix 4	4	A	111	115	Right-handed 310
Helix 5	5	A	159	162	Right-handed 310
Helix 6	6	A	168	173	Right-handed alpha
Helix 7	7	A	196	206	Right-handed alpha
Helix 8	8	A	212	228	Right-handed alpha
Helix 9	9	A	247	258	Right-handed alpha
Helix 10	10	A	274	282	Right-handed alpha
Helix 11	11	A	309	329	Right-handed alpha
Helix 12	12	B	12	15	Right-handed 310
Helix 13	13	B	31	46	Right-handed alpha
Helix 14	14	B	95	106	Right-handed alpha
Helix 15	15	B	111	115	Right-handed 310
Helix 16	16	B	159	162	Right-handed 310
Helix 17	17	B	168	173	Right-handed alpha
Helix 18	18	B	196	206	Right-handed alpha
Helix 19	19	B	212	228	Right-handed alpha
Helix 20	20	B	247	258	Right-handed alpha
Helix 21	21	B	274	282	Right-handed alpha
Helix 22	22	B	309	329	Right-handed alpha
Helix 23	23	C	12	15	Right-handed 310
Helix 24	24	C	31	46	Right-handed alpha
Helix 25	25	C	95	106	Right-handed alpha
Helix 26	26	C	111	115	Right-handed 310
Helix 27	27	C	159	162	Right-handed 310
Helix 28	28	C	168	173	Right-handed alpha
Helix 29	29	C	196	206	Right-handed alpha
Helix 30	30	C	212	228	Right-handed alpha
Helix 31	31	C	247	258	Right-handed alpha
Helix 32	32	C	274	282	Right-handed alpha
Helix 33	33	C	309	329	Right-handed alpha
Helix 34	34	D	12	15	Right-handed 310
Helix 35	35	D	31	46	Right-handed alpha
Helix 36	36	D	95	106	Right-handed alpha
Helix 37	37	D	111	115	Right-handed 310
Helix 38	38	D	159	162	Right-handed 310
Helix 39	39	D	168	173	Right-handed alpha
Helix 40	40	D	196	206	Right-handed alpha
Helix 41	41	D	212	228	Right-handed alpha
Helix 42	42	D	247	258	Right-handed alpha
Helix 43	43	D	274	282	Right-handed alpha
Helix 44	44	D	309	329	Right-handed alpha

There are 24 sheets in PDB entry 4JAY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	22	29	anti-parallel
Strand 3	A	64	71	parallel
Strand 4	A	49	52	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	337	339	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	82	first strand
Strand 2	A	85	91	anti-parallel
Strand 3	A	177	187	anti-parallel
Strand 4	A	140	147	anti-parallel
Strand 5	A	153	157	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	134	135	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	271	273	anti-parallel
Strand 3	A	263	265	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	292	294	anti-parallel
Strand 3	A	288	289	anti-parallel
Strand 4	B	191	192	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	10	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	64	71	parallel
Strand 4	B	49	52	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	337	339	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	82	first strand
Strand 2	B	85	91	anti-parallel
Strand 3	B	177	187	anti-parallel
Strand 4	B	140	147	anti-parallel
Strand 5	B	153	157	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	134	135	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	271	273	anti-parallel
Strand 3	B	263	265	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	292	294	anti-parallel
Strand 3	B	302	304	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	22	29	anti-parallel
Strand 3	C	64	71	parallel
Strand 4	C	49	52	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	337	339	parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	82	first strand
Strand 2	C	85	91	anti-parallel
Strand 3	C	177	187	anti-parallel
Strand 4	C	140	147	anti-parallel
Strand 5	C	152	157	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	134	135	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	246	first strand
Strand 2	C	271	273	anti-parallel
Strand 3	C	263	265	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	292	294	anti-parallel
Strand 3	C	302	304	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	64	71	parallel
Strand 4	D	49	52	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	337	339	parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	82	first strand
Strand 2	D	85	91	anti-parallel
Strand 3	D	177	187	anti-parallel
Strand 4	D	140	147	anti-parallel
Strand 5	D	152	157	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	134	135	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	271	273	anti-parallel
Strand 3	D	263	265	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	289	first strand
Strand 2	D	292	294	anti-parallel
Strand 3	D	302	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JAY

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JAY