Analysis of interatomic Contacts of Structural Units in PDB entry:
4JB2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JB2 entry

There is 1 chain in PDB entry 4JB2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29LYS 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4JB2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 53Right-handed alpha
Helix 2
2
A
54 57Right-handed 310
Helix 3
3
A
76 90Right-handed alpha
Helix 4
4
A
101 116Right-handed alpha
Helix 5
5
A
128 133Right-handed alpha
Helix 6
6
A
141 156Right-handed alpha
Helix 7
7
A
168 185Right-handed alpha
Helix 8
8
A
202 212Right-handed alpha
Helix 9
9
A
222 236Right-handed alpha
Helix 10
10
A
246 249Right-handed 310
Helix 11
11
A
250 258Right-handed alpha
Helix 12
12
A
259 262Right-handed 310
Helix 13
13
A
269 277Right-handed 310
Helix 14
14
A
283 299Right-handed alpha
Helix 15
15
A
304 326Right-handed alpha
Helix 16
16
A
332 346Right-handed alpha
Helix 17
17
A
367 371Right-handed 310
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There are 3 sheets in PDB entry 4JB2. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
64 72anti-parallel
Strand 3
A
31 37parallel
Strand 4
A
95 98parallel
Strand 5
A
119 121parallel
Strand 6
A
135 137parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 195first strand
Strand 2
A
160 166parallel
Strand 3
A
216 220parallel
Strand 4
A
241 244parallel
Strand 5
A
265 268parallel
Strand 6
A
372 377anti-parallel
Strand 7
A
380 385anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
355 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il