Analysis of interatomic Contacts of Structural Units in PDB entry:
4JB4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JB4 entry

There are 2 chains in PDB entry 4JB4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4LEU 294
C
 LEU 4LEU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4JB4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 33Right-handed alpha
Helix 2
2
A
42 55Right-handed alpha
Helix 3
3
A
69 72Right-handed 310
Helix 4
4
A
73 78Right-handed alpha
Helix 5
5
A
79 84Right-handed 310
Helix 6
6
A
85 99Right-handed alpha
Helix 7
7
A
103 119Right-handed alpha
Helix 8
8
A
134 138Right-handed 310
Helix 9
9
A
150 160Right-handed alpha
Helix 10
10
A
164 173Right-handed alpha
Helix 11
11
A
174 177Right-handed 310
Helix 12
12
A
181 186Right-handed alpha
Helix 13
13
A
200 209Right-handed alpha
Helix 14
14
A
232 241Right-handed alpha
Helix 15
15
A
241 254Right-handed alpha
Helix 16
16
A
254 272Right-handed alpha
Helix 17
17
A
289 293Right-handed 310
Helix 18
18
C
15 33Right-handed alpha
Helix 19
19
C
35 40Right-handed alpha
Helix 20
20
C
42 55Right-handed alpha
Helix 21
21
C
69 72Right-handed 310
Helix 22
22
C
73 78Right-handed alpha
Helix 23
23
C
79 84Right-handed 310
Helix 24
24
C
85 99Right-handed alpha
Helix 25
25
C
103 119Right-handed alpha
Helix 26
26
C
134 138Right-handed 310
Helix 27
27
C
150 160Right-handed alpha
Helix 28
28
C
164 172Right-handed alpha
Helix 29
29
C
173 177Right-handed 310
Helix 30
30
C
181 186Right-handed alpha
Helix 31
31
C
200 209Right-handed alpha
Helix 32
32
C
232 241Right-handed alpha
Helix 33
33
C
241 253Right-handed alpha
Helix 34
34
C
254 272Right-handed alpha
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There are 6 sheets in PDB entry 4JB4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
274 275parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
189 190anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 215first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
230 231anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
274 275parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 180first strand
Strand 2
C
189 190anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 215first strand
Strand 2
C
221 224anti-parallel
Strand 3
C
230 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il