Analysis of interatomic Contacts of Structural Units in PDB entry:
4JB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JB6 entry

There are 2 chains in PDB entry 4JB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 413
B
 SER 2ALA 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4JB6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 30Right-handed alpha
Helix 2
2
A
58 62Right-handed 310
Helix 3
3
A
64 69Right-handed alpha
Helix 4
4
A
72 90Right-handed alpha
Helix 5
5
A
111 126Right-handed alpha
Helix 6
6
A
127 130Right-handed 310
Helix 7
7
A
141 152Right-handed alpha
Helix 8
8
A
162 164Right-handed 310
Helix 9
9
A
165 180Right-handed alpha
Helix 10
10
A
196 206Right-handed alpha
Helix 11
11
A
215 219Right-handed 310
Helix 12
12
A
244 250Right-handed alpha
Helix 13
13
A
277 291Right-handed alpha
Helix 14
14
A
294 298Right-handed 310
Helix 15
15
A
308 324Right-handed alpha
Helix 16
16
A
325 329Right-handed 310
Helix 17
17
A
335 340Right-handed alpha
Helix 18
18
A
342 344Right-handed 310
Helix 19
19
A
345 360Right-handed alpha
Helix 20
20
B
20 30Right-handed alpha
Helix 21
21
B
58 62Right-handed 310
Helix 22
22
B
64 70Right-handed alpha
Helix 23
23
B
72 90Right-handed alpha
Helix 24
24
B
111 126Right-handed alpha
Helix 25
25
B
127 130Right-handed 310
Helix 26
26
B
141 152Right-handed alpha
Helix 27
27
B
162 164Right-handed 310
Helix 28
28
B
165 181Right-handed alpha
Helix 29
29
B
196 206Right-handed alpha
Helix 30
30
B
215 219Right-handed 310
Helix 31
31
B
244 250Right-handed alpha
Helix 32
32
B
277 291Right-handed alpha
Helix 33
33
B
294 298Right-handed 310
Helix 34
34
B
308 324Right-handed alpha
Helix 35
35
B
325 329Right-handed 310
Helix 36
36
B
335 340Right-handed alpha
Helix 37
37
B
342 344Right-handed 310
Helix 38
38
B
345 361Right-handed alpha
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There are 6 sheets in PDB entry 4JB6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
101 106parallel
Strand 3
A
185 192parallel
Strand 4
A
235 243anti-parallel
Strand 5
A
6 14anti-parallel
Strand 6
A
256 265anti-parallel
Strand 7
A
403 410anti-parallel
Strand 8
A
392 399anti-parallel
Strand 9
A
300 302parallel
Strand 10
A
331 333parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
50 52anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
386 387anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
101 106parallel
Strand 3
B
185 192parallel
Strand 4
B
235 243anti-parallel
Strand 5
B
6 14anti-parallel
Strand 6
B
256 265anti-parallel
Strand 7
B
403 410anti-parallel
Strand 8
B
392 399anti-parallel
Strand 9
B
300 302parallel
Strand 10
B
331 333parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
50 51anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 363first strand
Strand 2
B
386 387anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il