Analysis of interatomic Contacts of Structural Units in PDB entry:
4JB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JB7 entry

There is 1 chain in PDB entry 4JB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LYS 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4JB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 49Right-handed alpha
Helix 2
2
A
59 71Right-handed alpha
Helix 3
3
A
78 88Right-handed alpha
Helix 4
4
A
94 98Right-handed 310
Helix 5
5
A
120 126Right-handed 310
Helix 6
6
A
146 154Right-handed alpha
Helix 7
7
A
157 167Right-handed alpha
Helix 8
8
A
174 185Right-handed alpha
Helix 9
9
A
195 201Right-handed alpha
Helix 10
10
A
211 215Right-handed 310
Helix 11
11
A
229 242Right-handed alpha
Helix 12
12
A
242 251Right-handed alpha
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There are 2 sheets in PDB entry 4JB7. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
26 30parallel
Strand 3
A
73 76parallel
Strand 4
A
217 224anti-parallel
Strand 5
A
99 110anti-parallel
Strand 6
A
190 194anti-parallel
Strand 7
A
131 134parallel
Strand 8
A
168 172parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
26 30parallel
Strand 3
A
73 76parallel
Strand 4
A
217 224anti-parallel
Strand 5
A
99 110anti-parallel
Strand 6
A
206 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il