Analysis of interatomic Contacts of Structural Units in PDB entry:
4JB9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JB9 entry

There are 3 chains in PDB entry 4JB9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	VAL 44	GLU 492
H	GLU 1	LYS 214
L	GLU 1	CYS 209

There are 11 helices in PDB entry 4JB9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	G	64	74	Right-handed alpha
Helix 2	2	G	98	115	Right-handed alpha
Helix 3	3	G	335	351	Right-handed alpha
Helix 4	4	G	352	354	Right-handed 310
Helix 5	5	G	368	373	Right-handed alpha
Helix 6	6	G	388	392	Right-handed 310
Helix 7	7	G	475	484	Right-handed alpha
Helix 8	8	H	28	32	Right-handed 310
Helix 9	9	H	61	64	Right-handed 310
Helix 10	10	L	116	121	Right-handed alpha
Helix 11	11	L	178	184	Right-handed alpha

There are 18 sheets in PDB entry 4JB9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	86	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	215	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	92	first strand
Strand 2	G	238	239	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	121	first strand
Strand 2	G	431	434	anti-parallel
Strand 3	G	423	426	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	443	457	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	465	470	first strand
Strand 5	G	358	361	parallel

Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	298	anti-parallel
Strand 3	G	443	457	anti-parallel
Strand 4	G	328	334	first strand
Strand 5	G	413	421	anti-parallel
Strand 6	G	381	385	anti-parallel
Strand 7	G	374	378	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	76	82	anti-parallel
Strand 4	H	67	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	44	52	anti-parallel
Strand 6	H	56	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	100	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	138	145	anti-parallel
Strand 3	H	176	182	anti-parallel
Strand 4	H	163	165	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	138	145	anti-parallel
Strand 3	H	176	182	anti-parallel
Strand 4	H	169	170	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	196	first strand
Strand 2	H	209	211	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	200	first strand
Strand 2	H	205	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	97	101	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	33	37	anti-parallel
Strand 5	L	44	47	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	97	101	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	92	93	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	61	66	first strand
Strand 2	L	69	74	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	109	113	first strand
Strand 2	L	124	132	anti-parallel
Strand 3	L	169	177	anti-parallel
Strand 4	L	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	148	150	first strand
Strand 2	L	140	145	anti-parallel
Strand 3	L	186	192	anti-parallel
Strand 4	L	200	205	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JB9

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JB9