Analysis of interatomic Contacts of Structural Units in PDB entry:
4JBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JBC entry

There are 2 chains in PDB entry 4JBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2ALA 315
B
 THR 3ALA 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4JBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed 310
Helix 2
2
A
16 20Right-handed 310
Helix 3
3
A
50 54Right-handed 310
Helix 4
4
A
65 70Right-handed alpha
Helix 5
5
A
78 91Right-handed alpha
Helix 6
6
A
121 123Right-handed 310
Helix 7
7
A
129 143Right-handed alpha
Helix 8
8
A
155 159Right-handed 310
Helix 9
9
A
173 181Right-handed alpha
Helix 10
10
A
197 209Right-handed alpha
Helix 11
11
A
225 240Right-handed alpha
Helix 12
12
A
244 255Right-handed alpha
Helix 13
13
A
273 296Right-handed alpha
Helix 14
14
A
303 310Right-handed alpha
Helix 15
15
B
10 15Right-handed 310
Helix 16
16
B
16 20Right-handed 310
Helix 17
17
B
50 54Right-handed 310
Helix 18
18
B
65 70Right-handed alpha
Helix 19
19
B
78 93Right-handed alpha
Helix 20
20
B
121 123Right-handed 310
Helix 21
21
B
129 145Right-handed alpha
Helix 22
22
B
155 159Right-handed 310
Helix 23
23
B
173 181Right-handed alpha
Helix 24
24
B
197 211Right-handed alpha
Helix 25
25
B
225 240Right-handed alpha
Helix 26
26
B
244 255Right-handed alpha
Helix 27
27
B
268 272Right-handed 310
Helix 28
28
B
273 296Right-handed alpha
Helix 29
29
B
303 311Right-handed alpha
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There are 4 sheets in PDB entry 4JBC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
148 152anti-parallel
Strand 3
A
22 27parallel
Strand 4
A
113 119anti-parallel
Strand 5
A
107 110anti-parallel
Strand 6
A
171 172anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
71 74anti-parallel
Strand 3
A
216 220parallel
Strand 4
A
97 103parallel
Strand 5
A
184 190parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
148 152anti-parallel
Strand 3
B
22 27parallel
Strand 4
B
113 119anti-parallel
Strand 5
B
107 110anti-parallel
Strand 6
B
171 172anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
71 74anti-parallel
Strand 3
B
216 220parallel
Strand 4
B
97 103parallel
Strand 5
B
184 190parallel
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