Analysis of interatomic Contacts of Structural Units in PDB entry:
4JBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JBE entry

There are 2 chains in PDB entry 4JBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ARG 413
B
 THR 2ARG 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4JBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 25Right-handed alpha
Helix 2
2
A
27 45Right-handed alpha
Helix 3
3
A
45 63Right-handed alpha
Helix 4
4
A
66 74Right-handed alpha
Helix 5
5
A
76 93Right-handed alpha
Helix 6
6
A
128 142Right-handed alpha
Helix 7
7
A
154 165Right-handed alpha
Helix 8
8
A
165 173Right-handed alpha
Helix 9
9
A
176 178Right-handed 310
Helix 10
10
A
188 195Right-handed alpha
Helix 11
11
A
210 223Right-handed alpha
Helix 12
12
A
244 255Right-handed alpha
Helix 13
13
A
274 289Right-handed alpha
Helix 14
14
A
305 313Right-handed 310
Helix 15
15
A
323 335Right-handed alpha
Helix 16
16
A
346 357Right-handed alpha
Helix 17
17
A
367 371Right-handed 310
Helix 18
18
A
372 378Right-handed alpha
Helix 19
19
A
397 400Right-handed 310
Helix 20
20
B
3 25Right-handed alpha
Helix 21
21
B
27 45Right-handed alpha
Helix 22
22
B
45 63Right-handed alpha
Helix 23
23
B
66 74Right-handed alpha
Helix 24
24
B
76 93Right-handed alpha
Helix 25
25
B
128 142Right-handed alpha
Helix 26
26
B
151 153Right-handed 310
Helix 27
27
B
154 165Right-handed alpha
Helix 28
28
B
165 173Right-handed alpha
Helix 29
29
B
176 178Right-handed 310
Helix 30
30
B
189 194Right-handed alpha
Helix 31
31
B
210 223Right-handed alpha
Helix 32
32
B
244 255Right-handed alpha
Helix 33
33
B
274 289Right-handed alpha
Helix 34
34
B
305 313Right-handed 310
Helix 35
35
B
323 335Right-handed alpha
Helix 36
36
B
346 357Right-handed alpha
Helix 37
37
B
367 371Right-handed 310
Helix 38
38
B
372 378Right-handed alpha
Helix 39
39
B
397 400Right-handed 310
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There are 4 sheets in PDB entry 4JBE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 105first strand
Strand 2
A
109 117anti-parallel
Strand 3
A
402 410anti-parallel
Strand 4
B
361 364parallel
Strand 5
B
339 343parallel
Strand 6
B
235 239parallel
Strand 7
B
265 271parallel
Strand 8
B
315 321parallel
Strand 9
B
292 294parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
145 150parallel
Strand 3
A
120 125parallel
Strand 4
A
203 206parallel
Strand 5
A
226 228parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
315 321parallel
Strand 3
A
265 271parallel
Strand 4
A
235 239parallel
Strand 5
A
339 343parallel
Strand 6
A
361 364parallel
Strand 7
B
402 410parallel
Strand 8
B
109 117anti-parallel
Strand 9
B
99 105anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
145 149parallel
Strand 3
B
120 124parallel
Strand 4
B
203 206parallel
Strand 5
B
226 228parallel
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