Analysis of interatomic Contacts of Structural Units in PDB entry:
4JBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JBG entry

There are 4 chains in PDB entry 4JBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1PRO 331
B
 HIS -1PRO 331
C
 HIS -1PRO 331
D
 HIS -1PRO 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 4JBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
39 48Right-handed alpha
Helix 3
3
A
94 99Right-handed alpha
Helix 4
4
A
100 105Right-handed 310
Helix 5
5
A
138 143Right-handed alpha
Helix 6
6
A
147 159Right-handed alpha
Helix 7
7
A
174 187Right-handed alpha
Helix 8
8
A
197 208Right-handed alpha
Helix 9
9
A
215 223Right-handed alpha
Helix 10
10
A
236 243Right-handed alpha
Helix 11
11
A
264 271Right-handed alpha
Helix 12
12
A
282 295Right-handed alpha
Helix 13
13
A
310 320Right-handed alpha
Helix 14
14
B
10 12Right-handed 310
Helix 15
15
B
39 47Right-handed alpha
Helix 16
16
B
94 99Right-handed alpha
Helix 17
17
B
100 105Right-handed 310
Helix 18
18
B
138 143Right-handed alpha
Helix 19
19
B
147 159Right-handed alpha
Helix 20
20
B
174 187Right-handed alpha
Helix 21
21
B
197 208Right-handed alpha
Helix 22
22
B
215 223Right-handed alpha
Helix 23
23
B
236 241Right-handed alpha
Helix 24
24
B
264 272Right-handed alpha
Helix 25
25
B
282 295Right-handed alpha
Helix 26
26
B
310 318Right-handed alpha
Helix 27
27
C
10 14Right-handed 310
Helix 28
28
C
39 47Right-handed alpha
Helix 29
29
C
94 99Right-handed alpha
Helix 30
30
C
101 105Right-handed 310
Helix 31
31
C
138 143Right-handed alpha
Helix 32
32
C
147 159Right-handed alpha
Helix 33
33
C
174 187Right-handed alpha
Helix 34
34
C
197 208Right-handed alpha
Helix 35
35
C
215 223Right-handed alpha
Helix 36
36
C
236 241Right-handed alpha
Helix 37
37
C
264 271Right-handed alpha
Helix 38
38
C
282 295Right-handed alpha
Helix 39
39
C
310 319Right-handed alpha
Helix 40
40
D
10 14Right-handed 310
Helix 41
41
D
39 48Right-handed alpha
Helix 42
42
D
94 99Right-handed alpha
Helix 43
43
D
100 105Right-handed 310
Helix 44
44
D
138 143Right-handed alpha
Helix 45
45
D
147 159Right-handed alpha
Helix 46
46
D
174 187Right-handed alpha
Helix 47
47
D
197 208Right-handed alpha
Helix 48
48
D
215 223Right-handed alpha
Helix 49
49
D
236 243Right-handed alpha
Helix 50
50
D
264 272Right-handed alpha
Helix 51
51
D
282 295Right-handed alpha
Helix 52
52
D
310 318Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 4JBG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 5first strand
Strand 2
A
15 20anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
28 38anti-parallel
Strand 3
A
63 70anti-parallel
Strand 4
A
82 85anti-parallel
Strand 5
A
132 134anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
28 38anti-parallel
Strand 3
A
326 330anti-parallel
Strand 4
A
302 307parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
190 194parallel
Strand 3
A
166 170parallel
Strand 4
A
225 230parallel
Strand 5
A
244 252parallel
Strand 6
A
274 277parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
0 6first strand
Strand 2
B
14 20anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
28 38anti-parallel
Strand 3
B
63 70anti-parallel
Strand 4
B
82 85anti-parallel
Strand 5
B
132 134anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
28 38anti-parallel
Strand 3
B
326 330anti-parallel
Strand 4
B
302 307parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
190 194parallel
Strand 3
B
166 169parallel
Strand 4
B
225 230parallel
Strand 5
B
244 252parallel
Strand 6
B
274 277parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
0 5first strand
Strand 2
C
15 20anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 128first strand
Strand 2
C
28 38anti-parallel
Strand 3
C
63 70anti-parallel
Strand 4
C
82 85anti-parallel
Strand 5
C
132 134anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 128first strand
Strand 2
C
28 38anti-parallel
Strand 3
C
326 330anti-parallel
Strand 4
C
302 307parallel
Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 214first strand
Strand 2
C
190 194parallel
Strand 3
C
166 169parallel
Strand 4
C
225 230parallel
Strand 5
C
244 252parallel
Strand 6
C
274 277parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
0 5first strand
Strand 2
D
15 20anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 128first strand
Strand 2
D
28 38anti-parallel
Strand 3
D
63 70anti-parallel
Strand 4
D
82 85anti-parallel
Strand 5
D
132 134anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 128first strand
Strand 2
D
28 38anti-parallel
Strand 3
D
326 330anti-parallel
Strand 4
D
302 307parallel
Back to list of sheets
Back to top of page

There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 214first strand
Strand 2
D
190 194parallel
Strand 3
D
166 169parallel
Strand 4
D
225 230parallel
Strand 5
D
244 252parallel
Strand 6
D
274 277parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il