Analysis of interatomic Contacts of Structural Units in PDB entry:
4JBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JBK entry

There are 8 chains in PDB entry 4JBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3GLY 199
B
 THR 3GLY 199
C
 THR 3GLY 199
D
 THR 3GLY 199
E
 G 1 C 14
F
 G 1 C 14
G
 G 1 C 14
H
 G 1 C 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4JBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 61Right-handed 310
Helix 2
2
A
102 111Right-handed alpha
Helix 3
3
A
114 119Right-handed alpha
Helix 4
4
B
57 61Right-handed 310
Helix 5
5
B
94 98Right-handed 310
Helix 6
6
B
102 111Right-handed alpha
Helix 7
7
B
114 119Right-handed alpha
Helix 8
8
C
57 61Right-handed 310
Helix 9
9
C
102 111Right-handed alpha
Helix 10
10
C
114 119Right-handed alpha
Helix 11
11
D
57 61Right-handed 310
Helix 12
12
D
102 111Right-handed alpha
Helix 13
13
D
114 119Right-handed alpha
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There are 9 sheets in PDB entry 4JBK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
81 84anti-parallel
Strand 4
A
49 55parallel
Strand 5
A
40 46anti-parallel
Strand 6
A
19 26anti-parallel
Strand 7
A
69 73anti-parallel
Strand 8
A
89 92anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
173 182anti-parallel
Strand 3
A
187 190anti-parallel
Strand 4
A
153 158parallel
Strand 5
A
143 148anti-parallel
Strand 6
A
126 138anti-parallel
Strand 7
A
173 182anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
81 84anti-parallel
Strand 4
B
50 55parallel
Strand 5
B
40 45anti-parallel
Strand 6
B
19 26anti-parallel
Strand 7
B
69 73anti-parallel
Strand 8
B
89 92anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
172 181anti-parallel
Strand 3
B
188 190anti-parallel
Strand 4
B
153 158parallel
Strand 5
B
143 148anti-parallel
Strand 6
B
126 138anti-parallel
Strand 7
B
172 181anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 15first strand
Strand 2
C
75 78anti-parallel
Strand 3
C
81 84anti-parallel
Strand 4
C
50 55parallel
Strand 5
C
40 45anti-parallel
Strand 6
C
19 26anti-parallel
Strand 7
C
69 73anti-parallel
Strand 8
C
89 92anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 198first strand
Strand 2
C
172 181anti-parallel
Strand 3
C
188 190anti-parallel
Strand 4
C
153 158parallel
Strand 5
C
143 148anti-parallel
Strand 6
C
126 138anti-parallel
Strand 7
C
172 181anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 15first strand
Strand 2
D
75 78anti-parallel
Strand 3
D
81 84anti-parallel
Strand 4
D
49 55parallel
Strand 5
D
40 46anti-parallel
Strand 6
D
19 26anti-parallel
Strand 7
D
69 73anti-parallel
Strand 8
D
89 92anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 129first strand
Strand 2
D
175 180anti-parallel
Strand 3
D
188 190anti-parallel
Strand 4
D
152 158parallel
Strand 5
D
143 149anti-parallel
Strand 6
D
132 138anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 129first strand
Strand 2
D
175 180anti-parallel
Strand 3
D
196 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il